Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0031030

Physical Location & Seq

Genomic Coordinates Forward (+)

76098827 .. 76100456

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG443200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGCGACCTAGAAGCTGCCACGGAGGACTTCTTGCCGGAGAACATTGTTCCGGCAAATGGAGAGAAATTTCCCAATGTGGTGTACAGAGGCAAGCTCAAAGACGGCCGTTGGGTGGCTGTCAAGCGTTTCACGTACTCAGCTTGGCCTGATTCGGGCACTGCCAAAGATCTCAATCACAAGGATCTTCACAAAAAGTGTGGAGTTTTGGGCATCGGACAATGCACAGCTGCTTCCAATAATTCCCACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

84

Amino Acids

9.19

Weight (kDa)

7.8

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031030)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000015.1_g000007
rosa_samantha	Rh5AG443200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	2 cut(s)	86, 137
AfiI	CCNNNNNNNGG	3 cut(s)	59, 115, 155
AluBI	AGCT	4 cut(s)	17, 97, 143, 230
AluI	AGCT	4 cut(s)	17, 97, 143, 230
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	106, 146
ApeKI	GCWGC	2 cut(s)	17, 230
ApoI	RAATTY	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	4, 217
BceAI	ACGGC	2 cut(s)	93, 121
BfaI	CTAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	18, 231
BlsI	GCNGC	2 cut(s)	19, 232
BmsI	GCATC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BsaAI	YACGTR	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 115, 155
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	59, 115, 155
BseMII	CTCAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	161
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	4, 217
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	108, 148
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	38, 53
BslI	CCNNNNNNNGG	3 cut(s)	59, 115, 155
BsnI	GGCC	2 cut(s)	108, 148
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	169, 184
BspANI	GGCC	2 cut(s)	108, 148
BspCNI	CTCAG	1 cut(s)	152
BspPI	GGATC	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	169, 184
BstAUI	TGTACA	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	172, 187
BstMBI	GATC	2 cut(s)	169, 184
BstMCI	CGRYCG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	4, 217
BstX2I	RGATCY	2 cut(s)	169, 184
BstYI	RGATCY	2 cut(s)	169, 184
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	108, 148
BtgI	CCRYGG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	85, 136
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviJI	RGCY	7 cut(s)	17, 97, 108, 119, 143, 148, 230
CviKI_1	RGCY	7 cut(s)	17, 97, 108, 119, 143, 148, 230
CviQI	GTAC	2 cut(s)	85, 136
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	2 cut(s)	171, 186
DpnII	GATC	2 cut(s)	169, 184
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	106
FaiI	YATR	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	18, 231
Fsp4HI	GCNGC	2 cut(s)	18, 231
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	18, 231
HaeIII	GGCC	2 cut(s)	108, 148
HapII	CCGG	2 cut(s)	38, 53
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	2 cut(s)	38, 53
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	169, 184
LpnPI	CCDG	3 cut(s)	51, 66, 162
Lsp1109I	GCAGC	2 cut(s)	4, 217
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	134
MalI	GATC	2 cut(s)	171, 186
MboI	GATC	2 cut(s)	169, 184
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	2 cut(s)	169, 184
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	2 cut(s)	68, 241
MnlI	CCTC	2 cut(s)	19, 83
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	38, 53
NdeII	GATC	2 cut(s)	169, 184
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	19, 232
Ppu21I	YACGTR	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	169, 184
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	86, 137
RsaNI	GTAC	2 cut(s)	85, 136
SatI	GCNGC	2 cut(s)	18, 231
Sau3AI	GATC	2 cut(s)	169, 184
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	12, 19, 99, 137, 145, 232
SfaNI	GCATC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	68, 241
SspMI	CTAG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	137
TasI	AATT	2 cut(s)	68, 241
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	17, 230
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.