Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000084.1

Orthogroup ID

OG0031037

Physical Location & Seq

Genomic Coordinates Reverse (-)

28144 .. 30879

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000084.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtctcatcttgatcccctaaaagcgacgagatcacatatacctgctgcaaacatgtctgcaaggattgatgtccccacaagaggacatggtgccacccagaggagattggccatgagttccgctagagagcgtaggagacccataggttcgatggattcttgccctaagaagagagcgagtttgggacaacttgatccattgatcattgatactcaaaatctgtctcatgagaatattctggattgtggttttatccaaaagacattattgggggacgcctcaatgttagaaccaattcctgagaatatagagatctctacgaattacactagtgtacatgaagacaactttgatgcagctgttggggatgttacaataactacgaataggacaagaatggttgattttacacagccttacatggaatcaggactagttgtagttgttcctgtcaaacaggtaaaatcaaacccttgggctttcctgaagccatttactattgagatgtggttagtcaccggtgcattcttcctttttgtgggagtcgttgtttggattctagagcacaggattaatcacgagttccgtggtccaccaagggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

7.07

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031037)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000084.1_g000009 Rmu_sc0015231.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	8, 191
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	83, 102, 541
AflIII	ACRYGT	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	521
AhlI	ACTAGT	2 cut(s)	332, 436
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	3 cut(s)	9, 133, 231
AlwI	GGATC	2 cut(s)	8, 191
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	47, 359
AseI	ATTAAT	1 cut(s)	576
AsiGI	ACCGGT	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	34, 371
BccI	CCATC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	9, 133, 231
BcuI	ACTAGT	2 cut(s)	332, 436
BfaI	CTAG	4 cut(s)	126, 333, 437, 563
BfuAI	ACCTGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	2 cut(s)	48, 360
BlsI	GCNGC	2 cut(s)	49, 361
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	476, 589, 599
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 102, 541
Bse118I	RCCGGY	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	476, 589, 599
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	83, 102, 541
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	34, 371
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	3 cut(s)	59, 201, 290
BslI	CCNNNNNNNGG	3 cut(s)	83, 102, 541
BsmAI	GTCTC	3 cut(s)	9, 133, 231
BsmFI	GGGAC	3 cut(s)	59, 201, 290
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	5 cut(s)	13, 32, 196, 204, 315
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	8, 191
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	476, 589, 599
BssMI	GATC	5 cut(s)	13, 32, 196, 204, 315
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	581
BssT1I	CCWWGG	2 cut(s)	476, 599
Bst2BI	CACGAG	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	279
BstAUI	TGTACA	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	168, 303
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	5 cut(s)	16, 35, 199, 207, 318
BstMAI	GTCTC	3 cut(s)	9, 133, 231
BstMBI	GATC	5 cut(s)	13, 32, 196, 204, 315
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	34, 371
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	593
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	338
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	6 cut(s)	55, 89, 115, 230, 341, 424
CviJI	RGCY	5 cut(s)	113, 362, 418, 482, 493
CviKI_1	RGCY	5 cut(s)	113, 362, 418, 482, 493
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	168, 303
DpnI	GATC	5 cut(s)	15, 34, 198, 206, 317
DpnII	GATC	5 cut(s)	13, 32, 196, 204, 315
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	476, 599
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	476, 599
ErhI	CCWWGG	2 cut(s)	476, 599
FaeI	CATG	6 cut(s)	58, 92, 118, 233, 344, 427
FaqI	GGGAC	3 cut(s)	59, 201, 290
FatI	CATG	6 cut(s)	54, 88, 114, 229, 340, 423
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	48, 360
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	48, 360
FspBI	CTAG	4 cut(s)	126, 333, 437, 563
GluI	GCNGC	2 cut(s)	48, 360
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	6 cut(s)	58, 92, 118, 233, 344, 427
HinfI	GANTC	4 cut(s)	158, 428, 546, 559
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	338, 596
Hpy188III	TCNNGA	8 cut(s)	11, 230, 242, 302, 432, 487, 563, 581
Hpy8I	GTNNAC	2 cut(s)	338, 596
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	50, 62, 359, 527
HpyF3I	CTNAG	2 cut(s)	168, 303
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	58, 92, 118, 233, 344, 427
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	5 cut(s)	13, 32, 196, 204, 315
Lsp1109I	GCAGC	2 cut(s)	34, 371
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	4 cut(s)	126, 333, 437, 563
MaeIII	GTNAC	2 cut(s)	373, 517
MalI	GATC	5 cut(s)	15, 34, 198, 206, 317
MboI	GATC	5 cut(s)	13, 32, 196, 204, 315
MboII	GAAGA	3 cut(s)	184, 356, 523
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	297, 325
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	555
MnlI	CCTC	3 cut(s)	77, 96, 292
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	527
NdeII	GATC	5 cut(s)	13, 32, 196, 204, 315
NlaIII	CATG	6 cut(s)	58, 92, 118, 233, 344, 427
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	229
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	158, 428, 559
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	49, 361
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PscI	ACATGT	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	2 cut(s)	48, 360
Sau3AI	GATC	5 cut(s)	13, 32, 196, 204, 315
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	570
SetI	ASST	4 cut(s)	46, 151, 364, 465
SfaNI	GCATC	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	593
SpeI	ACTAGT	2 cut(s)	332, 436
Sse9I	AATT	2 cut(s)	297, 325
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	126, 333, 437, 563
StyI	CCWWGG	2 cut(s)	476, 599
TaqI	TCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	297, 325
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	3 cut(s)	158, 428, 559
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	47, 359
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	593
VspI	ATTAAT	1 cut(s)	576
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	4 cut(s)	126, 333, 437, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.