Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015231.1

Orthogroup ID

OG0031037

Physical Location & Seq

Genomic Coordinates Reverse (-)

4305 .. 7281

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015231.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgtctcatcttgatcccctaaaagcgacgagatcacatatacctactgcaaacatgtctgcaaggattgatgtccccacaagaggacatggtgccacccagaggagattggccatgagttccgctagagagcgtaggagacccataggttcgatggattcttgccctaagaagagagcgagtttgggacaacttgatccattgatcattgatactcaaaatctgtctcatgagaatattctggattgtggttttatccaaaagacattattgggggacgcctcaatgttagaaccaattcctgagaatatagagatctctacgaattacactagtgtacatgaagacgttgaattagattcactaatgaagaggaaggatttcgggcctgagatgccaacatctcctaacataaaacttgttgacattaataggttgctggatctagttctttacgccggctgctgtgaaggttggcggctgaacgatgaaggttggcctagtgaaaagaaagacgccttcagaactgagagtaagtttttcaattcatggatgttttgtatagaaatgggcactgggtcatggataactggaggcggaggaaactttgatgcagctgttggggatgttacaataactacgaataggacaagaatggttgattttacacagccttacatggaatcaggactagttgtagttgttcctgtcaaacaggtaaaatcaaacccttgggctttcctgaagccatttactattgagatgtggttagtcaccggtgcattcttcctttttgtgggagtcgttgtttggattctagagcacaggattaatcacgagttccgtggtccaccaagggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

287

Amino Acids

32.33

Weight (kDa)

6.19

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031037)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000084.1_g000009 Rmu_sc0015231.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	3 cut(s)	123, 478, 597
AclWI	GGATC	3 cut(s)	8, 191, 450
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	505, 764
AcyI	GRCGYC	2 cut(s)	279, 516
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	83, 102, 796
AflIII	ACRYGT	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	776
AgsI	TTSAA	2 cut(s)	353, 544
AhlI	ACTAGT	2 cut(s)	332, 691
AluBI	AGCT	1 cut(s)	617
AluI	AGCT	1 cut(s)	617
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	3 cut(s)	9, 133, 231
AlwI	GGATC	3 cut(s)	8, 191, 450
AoxI	GGCC	3 cut(s)	111, 386, 497
ApeKI	GCWGC	2 cut(s)	462, 614
AseI	ATTAAT	2 cut(s)	429, 831
AsiGI	ACCGGT	1 cut(s)	776
Asp700I	GAANNNNTTC	2 cut(s)	297, 380
AspS9I	GGNCC	2 cut(s)	386, 848
AsuHPI	GGTGA	1 cut(s)	766
AvaII	GGWCC	1 cut(s)	848
BaeGI	GKGCMC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	449, 626
BccI	CCATC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	9, 133, 231
BcuI	ACTAGT	2 cut(s)	332, 691
BfaI	CTAG	6 cut(s)	126, 333, 446, 501, 692, 818
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	3 cut(s)	463, 479, 615
BlsI	GCNGC	3 cut(s)	464, 480, 616
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	386, 848
BmiI	GGNNCC	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	384, 601
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	612
BsaHI	GRCGYC	2 cut(s)	279, 516
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	731, 844, 854
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 102, 796
Bse118I	RCCGGY	2 cut(s)	458, 776
Bse1I	ACTGG	2 cut(s)	580, 595
BseDI	CCNNGG	3 cut(s)	731, 844, 854
BseGI	GGATG	2 cut(s)	558, 631
BseLI	CCNNNNNNNGG	3 cut(s)	83, 102, 796
BseMII	CTCAG	3 cut(s)	294, 381, 519
BseNI	ACTGG	2 cut(s)	580, 595
BseRI	GAGGAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	449, 626
BshFI	GGCC	3 cut(s)	113, 388, 499
BshNI	GGYRCC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	825
BsiSI	CCGG	2 cut(s)	459, 777
BslFI	GGGAC	3 cut(s)	59, 201, 290
BslI	CCNNNNNNNGG	3 cut(s)	83, 102, 796
BsmAI	GTCTC	3 cut(s)	9, 133, 231
BsmFI	GGGAC	3 cut(s)	59, 201, 290
BsmI	GAATGC	1 cut(s)	782
BsnI	GGCC	3 cut(s)	113, 388, 499
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	575, 825
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
BspACI	CCGC	3 cut(s)	123, 478, 597
BspANI	GGCC	3 cut(s)	113, 388, 499
BspCNI	CTCAG	3 cut(s)	295, 382, 520
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	3 cut(s)	8, 191, 450
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	133
BsrFI	RCCGGY	2 cut(s)	458, 776
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	580, 595
BssAI	RCCGGY	2 cut(s)	458, 776
BssECI	CCNNGG	3 cut(s)	731, 844, 854
BssMI	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
BssNI	GRCGYC	2 cut(s)	279, 516
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	2 cut(s)	731, 854
Bst2BI	CACGAG	1 cut(s)	836
Bst6I	CTCTTC	2 cut(s)	167, 365
BstACI	GRCGYC	2 cut(s)	279, 516
BstAUI	TGTACA	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	4 cut(s)	168, 303, 390, 528
BstDSI	CCRYGG	1 cut(s)	844
BstF5I	GGATG	2 cut(s)	558, 631
BstKTI	GATC	6 cut(s)	16, 35, 199, 207, 318, 445
BstMAI	GTCTC	3 cut(s)	9, 133, 231
BstMBI	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	449, 626
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	315, 442
BstYI	RGATCY	2 cut(s)	315, 442
BsuRI	GGCC	3 cut(s)	113, 388, 499
BtgI	CCRYGG	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	558, 631
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	458, 776
Cfr13I	GGNCC	2 cut(s)	386, 848
CseI	GACGC	2 cut(s)	287, 524
Csp6I	GTAC	1 cut(s)	338
CspAI	ACCGGT	1 cut(s)	776
CviAII	CATG	8 cut(s)	55, 89, 115, 230, 341, 549, 582, 679
CviJI	RGCY	9 cut(s)	113, 388, 462, 481, 499, 617, 673, 737, 748
CviKI_1	RGCY	9 cut(s)	113, 388, 462, 481, 499, 617, 673, 737, 748
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	168, 303, 390, 528
DpnI	GATC	6 cut(s)	15, 34, 198, 206, 317, 444
DpnII	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	167, 365
EarI	CTCTTC	2 cut(s)	167, 365
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	731, 854
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	505, 764
EcoT14I	CCWWGG	2 cut(s)	731, 854
ErhI	CCWWGG	2 cut(s)	731, 854
FaeI	CATG	8 cut(s)	58, 92, 118, 233, 344, 552, 585, 682
FaqI	GGGAC	3 cut(s)	59, 201, 290
FatI	CATG	8 cut(s)	54, 88, 114, 229, 340, 548, 581, 678
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	463, 479, 615
FokI	GGATG	2 cut(s)	565, 638
Fsp4HI	GCNGC	3 cut(s)	463, 479, 615
FspBI	CTAG	6 cut(s)	126, 333, 446, 501, 692, 818
GluI	GCNGC	3 cut(s)	463, 479, 615
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	113, 388, 499
HapII	CCGG	2 cut(s)	459, 777
HgaI	GACGC	2 cut(s)	287, 524
Hin1I	GRCGYC	2 cut(s)	279, 516
Hin1II	CATG	8 cut(s)	58, 92, 118, 233, 344, 552, 585, 682
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	158, 359, 683, 801, 814
HpaII	CCGG	2 cut(s)	459, 777
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	3 cut(s)	338, 424, 851
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	8 cut(s)	11, 230, 242, 302, 687, 742, 818, 836
Hpy8I	GTNNAC	3 cut(s)	338, 424, 851
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	4 cut(s)	370, 464, 485, 529
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	50, 62, 614, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	4 cut(s)	168, 303, 390, 528
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	2 cut(s)	279, 516
Hsp92II	CATG	8 cut(s)	58, 92, 118, 233, 344, 552, 585, 682
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
Lsp1109I	GCAGC	2 cut(s)	449, 626
LweI	GCATC	2 cut(s)	384, 601
MaeI	CTAG	6 cut(s)	126, 333, 446, 501, 692, 818
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	628, 772
MalI	GATC	6 cut(s)	15, 34, 198, 206, 317, 444
MboI	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
MboII	GAAGA	4 cut(s)	184, 356, 382, 778
MflI	RGATCY	2 cut(s)	315, 442
MhlI	GDGCHC	2 cut(s)	575, 825
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	297, 325, 353, 544
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	810
MnlI	CCTC	6 cut(s)	77, 96, 292, 366, 587, 593
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	458
MroXI	GAANNNNTTC	2 cut(s)	297, 380
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	2 cut(s)	429, 831
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	459, 777
Mva1269I	GAATGC	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	394
NaeI	GCCGGC	1 cut(s)	460
NdeII	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	8 cut(s)	58, 92, 118, 233, 344, 552, 585, 682
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	772
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	229
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	782
PdiI	GCCGGC	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	297, 380
PfeI	GAWTC	4 cut(s)	158, 359, 683, 814
PinAI	ACCGGT	1 cut(s)	776
PkrI	GCNGC	3 cut(s)	464, 480, 616
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
PscI	ACATGT	1 cut(s)	54
PshBI	ATTAAT	2 cut(s)	429, 831
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	386, 848
PsuI	RGATCY	2 cut(s)	315, 442
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	429, 831
SatI	GCNGC	3 cut(s)	463, 479, 615
Sau3AI	GATC	6 cut(s)	13, 32, 196, 204, 315, 442
Sau96I	GGNCC	2 cut(s)	386, 848
SchI	GAGTC	1 cut(s)	810
SduI	GDGCHC	2 cut(s)	575, 825
SetI	ASST	8 cut(s)	46, 151, 351, 437, 475, 496, 619, 720
SfaNI	GCATC	2 cut(s)	384, 601
SgrAI	CRCCGGYG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	848
SpeI	ACTAGT	2 cut(s)	332, 691
Sse9I	AATT	4 cut(s)	297, 325, 353, 544
SsiI	CCGC	3 cut(s)	123, 478, 597
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	6 cut(s)	126, 333, 446, 501, 692, 818
StyI	CCWWGG	2 cut(s)	731, 854
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	297, 325, 353, 544
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	4 cut(s)	158, 359, 683, 814
Tru1I	TTAA	2 cut(s)	429, 831
Tru9I	TTAA	2 cut(s)	429, 831
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	2 cut(s)	462, 614
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	4 cut(s)	357, 383, 504, 537
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	848
VspI	ATTAAT	2 cut(s)	429, 831
XbaI	TCTAGA	1 cut(s)	817
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	2 cut(s)	297, 380
XspI	CTAG	6 cut(s)	126, 333, 446, 501, 692, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.