Rmu_sc0000115.1_g000023

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000115.1
OG0031040
Physical Location & Seq
Forward (+)
117400 .. 118071
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000115.1_g000023.1.cds

Sequence Viewer

Length: 672 bp
atgaactcccaagagttatgggtgcatgcttatagcagactcagatcatgcaaatcaataagcataactcatctcaaacaaacccacacatttctcatcaaaacaaggcctcttcctcttcctctcccaacccaacacctcatctaccctaaactcatttcttctcctcatcacaacaacaaccttacctacattctctccttcttaaaccacttggacaagccagacctctgcctcagcctctacaatgccatcatccaaggcctcccttccaatcccacaaacaaaaccacgtcccttcttcaagtgcttgaactacttcggcatatgctcctcaatggcctccttcctgaccactacactgtcccctctgtgctcaaagcgtgtgcacagtgccgtgcgctgagagaaggccagcaaatccacgcctatgcaatcaaatccggactcgttttgtccaatgtgtacgtcaagaacacaatcatgaggctctacgcagtttgtgggattgtaaattacgtctggaaggtgttcgacgaaagtccccagagggacctggtatcttggactactcttattcagggatatgttaaaatggggctggccagggaaggcgtggaggccttctttgataaccatcattcacaacaatttgctttatataatagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

223

Amino Acids

25.53

Weight (kDa)

9.4

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031040)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000115.1_g000023 Rmu_sc0000115.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 603
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 2 cut(s) 305, 314
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 2 cut(s) 555, 605
Alw21I GWGCWC 2 cut(s) 378, 391
Alw44I GTGCAC 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 443
AoxI GGCC 6 cut(s) 107, 262, 340, 412, 603, 621
ApaLI GTGCAC 1 cut(s) 387
Asp700I GAANNNNTTC 2 cut(s) 318, 530
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 553
AvaII GGWCC 1 cut(s) 553
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 378, 391
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 260, 645
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 2 cut(s) 557, 607
Bme1390I CCNGG 2 cut(s) 557, 607
Bme18I GGWCC 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 554
BmrFI CCNGG 2 cut(s) 557, 607
BoxI GACNNNNGTC 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 259, 606
BsaWI WCCGGW 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 443
BseBI CCWGG 2 cut(s) 557, 607
BseDI CCNNGG 2 cut(s) 259, 606
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 636
BseMII CTCAG 3 cut(s) 55, 250, 395
BseRI GAGGAG 2 cut(s) 156, 323
BseSI GKGCMC 1 cut(s) 391
BshFI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BsiHKAI GWGCWC 2 cut(s) 378, 391
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 4 cut(s) 280, 350, 528, 566
BsmFI GGGAC 4 cut(s) 280, 350, 528, 566
BsnI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
Bsp1286I GDGCHC 2 cut(s) 378, 391
Bsp13I TCCGGA 1 cut(s) 443
Bsp143I GATC 1 cut(s) 44
BspANI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BspCNI CTCAG 3 cut(s) 54, 249, 396
BspEI TCCGGA 1 cut(s) 443
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 554
BssECI CCNNGG 2 cut(s) 259, 606
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 557, 607
Bst4CI ACNGT 2 cut(s) 364, 393
Bst6I CTCTTC 2 cut(s) 117, 123
BstC8I GCNNGC 3 cut(s) 27, 416, 603
BstDEI CTNAG 3 cut(s) 41, 236, 404
BstF5I GGATG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 557, 607
BstNSI RCATGY 1 cut(s) 29
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 555, 605
BstSLI GKGCMC 1 cut(s) 391
BsuRI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 360, 398
Cac8I GCNNGC 3 cut(s) 27, 416, 603
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 555
Csp6I GTAC 1 cut(s) 466
CviAII CATG 3 cut(s) 26, 48, 484
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 41, 236, 404
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 117, 123
EarI CTCTTC 2 cut(s) 117, 123
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 3 cut(s) 109, 264, 623
Eco47I GGWCC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 555, 605
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 29, 51, 487
FaqI GGGAC 4 cut(s) 280, 350, 528, 566
FatI CATG 3 cut(s) 25, 47, 483
FauNDI CATATG 1 cut(s) 327
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 402
HaeIII GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
HapII CCGG 1 cut(s) 444
HhaI GCGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 29, 51, 487
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 2 cut(s) 39, 447
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 2 cut(s) 389, 466
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 5 cut(s) 350, 444, 472, 484, 523
Hpy8I GTNNAC 2 cut(s) 389, 466
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 8 cut(s) 211, 279, 308, 356, 404, 520, 605, 634
HpyCH4III ACNGT 2 cut(s) 364, 393
HpyCH4IV ACGT 3 cut(s) 293, 468, 519
HpyCH4V TGCA 4 cut(s) 25, 51, 389, 434
HpyF3I CTNAG 3 cut(s) 41, 236, 404
HpySE526I ACGT 3 cut(s) 293, 468, 519
Hsp92II CATG 3 cut(s) 29, 51, 487
HspAI GCGC 1 cut(s) 401
Kpn2I TCCGGA 1 cut(s) 443
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 336
MabI ACCWGGT 1 cut(s) 555
MaeII ACGT 3 cut(s) 293, 468, 519
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 104, 110, 153, 293
MhlI GDGCHC 2 cut(s) 378, 391
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 2 cut(s) 514, 650
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 2 cut(s) 33, 441
Mox20I TGGCCA 1 cut(s) 605
MroI TCCGGA 1 cut(s) 443
MroXI GAANNNNTTC 2 cut(s) 318, 530
MscI TGGCCA 1 cut(s) 605
MseI TTAA 2 cut(s) 206, 591
MslI CAYNNNNRTG 2 cut(s) 429, 482
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 557, 607
MvaI CCWGG 2 cut(s) 557, 607
NdeI CATATG 1 cut(s) 327
NdeII GATC 1 cut(s) 44
NlaIII CATG 3 cut(s) 29, 51, 487
NlaIV GGNNCC 1 cut(s) 554
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 3 cut(s) 109, 264, 623
PdmI GAANNNNTTC 2 cut(s) 318, 530
PleI GAGTC 2 cut(s) 33, 441
PpsI GAGTC 2 cut(s) 33, 441
PpuMI RGGWCCY 1 cut(s) 553
PshAI GACNNNNGTC 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 555, 605
PspGI CCWGG 2 cut(s) 555, 605
PspN4I GGNNCC 1 cut(s) 554
PspPI GGNCC 1 cut(s) 553
PspPPI RGGWCCY 1 cut(s) 553
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 2 cut(s) 429, 482
SaqAI TTAA 2 cut(s) 206, 591
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 553
SchI GAGTC 2 cut(s) 33, 441
ScrFI CCNGG 2 cut(s) 557, 607
SduI GDGCHC 2 cut(s) 378, 391
SetI ASST 9 cut(s) 141, 186, 191, 231, 296, 471, 522, 531, 558
SexAI ACCWGGT 1 cut(s) 555
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 429, 482
SphI GCATGC 1 cut(s) 29
Sse9I AATT 2 cut(s) 514, 650
SseBI AGGCCT 3 cut(s) 109, 264, 623
StuI AGGCCT 3 cut(s) 109, 264, 623
StyD4I CCNGG 2 cut(s) 555, 605
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 364, 393
TaiI ACGT 3 cut(s) 296, 471, 522
TaqI TCGA 1 cut(s) 534
TasI AATT 2 cut(s) 514, 650
Tru1I TTAA 2 cut(s) 206, 591
Tru9I TTAA 2 cut(s) 206, 591
TscAI CASTG 2 cut(s) 367, 398
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 367, 398
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 553
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmnI GAANNNNTTC 2 cut(s) 318, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.