Rmu_sc0000115.1_g000026

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000115.1
OG0031040
Physical Location & Seq
Forward (+)
120341 .. 121012
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000115.1_g000026.1.cds

Sequence Viewer

Length: 672 bp
atgaactcccaagagttatgggtgcatgcttatagcagactcagatcatgcaaatcaataagcataactcatctcaaacaaacccacacatttctcatcaaaacaaggcctcttcctcttcctctcccaacccaacaccccatctaccctaaactcatttcttctactcatcacaacaacaacctcacctacattctctccttcttaaaccacttggacaagccagacctctgcctcagcctctacaatgccatcatccaaggcctcccttccaatcccacaaacaaaaccacgtcccttcttcaagtgcttgaactacttcggcatatgctcctcaatggcctccttcctgaccactacactgtcccctctgtgctcaaagcgtgtgcacagtgccgtgcgctgagagaaggccagcaaatccacgcctatgcaatcaaatccggactcgttttgtccaatgtgtacgtcaacaacacaatcatgaggctctacgcagtttgtgggattgtaaattacgtccggaaggtgttcgacgaaagtccccagagggacttggtatcttggactactcttattcagggatatgttaaaatggggctggccagggaaggcgtggaggccttctttgataaccatcattcacaacaatttgctttatataatagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

223

Amino Acids

25.47

Weight (kDa)

9.42

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031040)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000115.1_g000023 Rmu_sc0000115.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 443, 522
AcoI YGGCCR 1 cut(s) 603
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 2 cut(s) 305, 314
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 605
Alw21I GWGCWC 2 cut(s) 378, 391
Alw44I GTGCAC 1 cut(s) 387
Aor13HI TCCGGA 2 cut(s) 443, 522
AoxI GGCC 6 cut(s) 107, 262, 340, 412, 603, 621
ApaLI GTGCAC 1 cut(s) 387
Asp700I GAANNNNTTC 2 cut(s) 318, 530
AspLEI GCGC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 378, 391
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 3 cut(s) 149, 260, 645
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 607
Bme1390I CCNGG 1 cut(s) 607
BmgBI CACGTC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 607
BoxI GACNNNNGTC 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 259, 606
BsaWI WCCGGW 2 cut(s) 443, 522
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 2 cut(s) 443, 522
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 2 cut(s) 259, 606
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 636
BseMII CTCAG 3 cut(s) 55, 250, 395
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 391
BshFI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BsiHKAI GWGCWC 2 cut(s) 378, 391
BsiSI CCGG 2 cut(s) 444, 523
BslFI GGGAC 4 cut(s) 280, 350, 528, 566
BsmFI GGGAC 4 cut(s) 280, 350, 528, 566
BsnI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
Bsp1286I GDGCHC 2 cut(s) 378, 391
Bsp13I TCCGGA 2 cut(s) 443, 522
Bsp143I GATC 1 cut(s) 44
BspANI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BspCNI CTCAG 3 cut(s) 54, 249, 396
BspEI TCCGGA 2 cut(s) 443, 522
BspHI TCATGA 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 259, 606
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 364, 393
Bst6I CTCTTC 2 cut(s) 117, 123
BstC8I GCNNGC 3 cut(s) 27, 416, 603
BstDEI CTNAG 3 cut(s) 41, 236, 404
BstF5I GGATG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 29
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 605
BstSLI GKGCMC 1 cut(s) 391
BsuRI GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 360, 398
Cac8I GCNNGC 3 cut(s) 27, 416, 603
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 466
CviAII CATG 3 cut(s) 26, 48, 484
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 41, 236, 404
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 117, 123
EarI CTCTTC 2 cut(s) 117, 123
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 3 cut(s) 109, 264, 623
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 29, 51, 487
FaqI GGGAC 4 cut(s) 280, 350, 528, 566
FatI CATG 3 cut(s) 25, 47, 483
FauNDI CATATG 1 cut(s) 327
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 402
HaeIII GGCC 6 cut(s) 109, 264, 342, 414, 605, 623
HapII CCGG 2 cut(s) 444, 523
HhaI GCGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 29, 51, 487
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 2 cut(s) 39, 447
HpaII CCGG 2 cut(s) 444, 523
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 389, 466, 472
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 4 cut(s) 350, 444, 484, 523
Hpy8I GTNNAC 3 cut(s) 389, 466, 472
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 8 cut(s) 211, 279, 308, 356, 404, 520, 605, 634
HpyCH4III ACNGT 2 cut(s) 364, 393
HpyCH4IV ACGT 3 cut(s) 293, 468, 519
HpyCH4V TGCA 4 cut(s) 25, 51, 389, 434
HpyF3I CTNAG 3 cut(s) 41, 236, 404
HpySE526I ACGT 3 cut(s) 293, 468, 519
Hsp92II CATG 3 cut(s) 29, 51, 487
HspAI GCGC 1 cut(s) 401
Kpn2I TCCGGA 2 cut(s) 443, 522
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 336
MaeII ACGT 3 cut(s) 293, 468, 519
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 104, 110, 153, 293
MhlI GDGCHC 2 cut(s) 378, 391
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 2 cut(s) 514, 650
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 2 cut(s) 33, 441
Mox20I TGGCCA 1 cut(s) 605
MroI TCCGGA 2 cut(s) 443, 522
MroXI GAANNNNTTC 2 cut(s) 318, 530
MscI TGGCCA 1 cut(s) 605
MseI TTAA 2 cut(s) 206, 591
MslI CAYNNNNRTG 2 cut(s) 429, 482
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 2 cut(s) 444, 523
MspR9I CCNGG 1 cut(s) 607
MvaI CCWGG 1 cut(s) 607
NdeI CATATG 1 cut(s) 327
NdeII GATC 1 cut(s) 44
NlaIII CATG 3 cut(s) 29, 51, 487
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 3 cut(s) 109, 264, 623
PdmI GAANNNNTTC 2 cut(s) 318, 530
PleI GAGTC 2 cut(s) 33, 441
PpsI GAGTC 2 cut(s) 33, 441
PshAI GACNNNNGTC 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 2 cut(s) 429, 482
SaqAI TTAA 2 cut(s) 206, 591
Sau3AI GATC 1 cut(s) 44
SchI GAGTC 2 cut(s) 33, 441
ScrFI CCNGG 1 cut(s) 607
SduI GDGCHC 2 cut(s) 378, 391
SetI ASST 7 cut(s) 186, 191, 231, 296, 471, 522, 531
SmiMI CAYNNNNRTG 2 cut(s) 429, 482
SphI GCATGC 1 cut(s) 29
Sse9I AATT 2 cut(s) 514, 650
SseBI AGGCCT 3 cut(s) 109, 264, 623
StuI AGGCCT 3 cut(s) 109, 264, 623
StyD4I CCNGG 1 cut(s) 605
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 364, 393
TaiI ACGT 3 cut(s) 296, 471, 522
TaqI TCGA 1 cut(s) 534
TasI AATT 2 cut(s) 514, 650
Tru1I TTAA 2 cut(s) 206, 591
Tru9I TTAA 2 cut(s) 206, 591
TscAI CASTG 2 cut(s) 367, 398
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 367, 398
VneI GTGCAC 1 cut(s) 387
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmnI GAANNNNTTC 2 cut(s) 318, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.