Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000126.1

Orthogroup ID

OG0031041

Physical Location & Seq

Genomic Coordinates Reverse (-)

6638 .. 7439

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000126.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgaaagttggccggaatccggccaaaattggcttgaatccggctaccggtgaccggattccggcgaccagtgatcggattccggcagtcgatgctacatcatggctaattaatccaccagatcaggctttggcgttcatcttggctgacaaagggtttgatgtatggcttgctaatactcgaggaacagacgtctctagctgtggacacaaatcacttactactaatgatcctgcttattgggactggacatgggaacagttggctgcttatgatcttcctgctttgttcaattatgtgaacaagcaaacaggacagaagtcacactatgttggccattccttaggaacgttgacaatgctagctgccttgtcccaacaaaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

6.81

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031041)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000126.1_g000002 Rmu_sc0000195.1_g000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AclI	AACGTT	1 cut(s)	350
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	3 cut(s)	10, 21, 334
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	5 cut(s)	19, 47, 54, 61, 75
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	37, 292
AluBI	AGCT	3 cut(s)	201, 365, 385
AluI	AGCT	3 cut(s)	201, 365, 385
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	3 cut(s)	10, 21, 334
ApeKI	GCWGC	2 cut(s)	266, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AseI	ATTAAT	1 cut(s)	111
AsiGI	ACCGGT	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	253, 352
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	198, 362
BisI	GCNGC	2 cut(s)	267, 366
BlsI	GCNGC	2 cut(s)	268, 367
BmeT110I	CYCGRG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	365
BoxI	GACNNNNGTC	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	192
BsaWI	WCCGGW	2 cut(s)	47, 54
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 47, 54, 61, 75
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	69, 251
Bse21I	CCTNAGG	1 cut(s)	343
BseLI	CCNNNNNNNGG	5 cut(s)	19, 47, 54, 61, 75
BseNI	ACTGG	2 cut(s)	69, 251
BseXI	GCAGC	2 cut(s)	253, 352
BshFI	GGCC	3 cut(s)	12, 23, 336
BshTI	ACCGGT	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	7 cut(s)	13, 20, 41, 48, 55, 62, 83
BslFI	GGGAC	2 cut(s)	257, 358
BslI	CCNNNNNNNGG	5 cut(s)	19, 47, 54, 61, 75
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	257, 358
BsnI	GGCC	3 cut(s)	12, 23, 336
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	73, 121, 229, 274
BspANI	GGCC	3 cut(s)	12, 23, 336
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	69, 251
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	4 cut(s)	73, 121, 229, 274
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	171, 363
BstDEI	CTNAG	1 cut(s)	343
BstEII	GGTNACC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	76, 124, 232, 277
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	4 cut(s)	73, 121, 229, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	319
BstPI	GGTNACC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	253, 352
Bsu36I	CCTNAGG	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	12, 23, 336
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	171, 363
Cfr10I	RCCGGY	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	2 cut(s)	102, 252
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	4 cut(s)	75, 123, 231, 276
DpnII	GATC	4 cut(s)	73, 121, 229, 274
EaeI	YGGCCR	3 cut(s)	10, 21, 334
Eco81I	CCTNAGG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	105, 255
FaiI	YATR	6 cut(s)	103, 166, 253, 273, 297, 330
FaqI	GGGAC	2 cut(s)	257, 358
FatI	CATG	2 cut(s)	101, 251
Fnu4HI	GCNGC	2 cut(s)	267, 366
Fsp4HI	GCNGC	2 cut(s)	267, 366
FspBI	CTAG	2 cut(s)	198, 362
GluI	GCNGC	2 cut(s)	267, 366
HaeIII	GGCC	3 cut(s)	12, 23, 336
HapII	CCGG	7 cut(s)	13, 20, 41, 48, 55, 62, 83
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	105, 255
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	4 cut(s)	16, 37, 58, 79
HpaII	CCGG	7 cut(s)	13, 20, 41, 48, 55, 62, 83
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	206, 301, 354
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	3 cut(s)	206, 301, 354
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	2 cut(s)	192, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	2 cut(s)	192, 350
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	105, 255
Kzo9I	GATC	4 cut(s)	73, 121, 229, 274
Lsp1109I	GCAGC	2 cut(s)	253, 352
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	198, 362
MaeII	ACGT	2 cut(s)	192, 350
MaeIII	GTNAC	2 cut(s)	50, 321
MalI	GATC	4 cut(s)	75, 123, 231, 276
MboI	GATC	4 cut(s)	73, 121, 229, 274
MboII	GAAGA	1 cut(s)	269
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	27, 108, 292
MluNI	TGGCCA	1 cut(s)	336
MnlI	CCTC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	336
MspI	CCGG	7 cut(s)	13, 20, 41, 48, 55, 62, 83
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	4 cut(s)	73, 121, 229, 274
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	105, 255
NmuCI	GTSAC	2 cut(s)	50, 321
PaeR7I	CTCGAG	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	16, 37, 58, 79
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	268, 367
PshAI	GACNNNNGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	111
Psp1406I	AACGTT	1 cut(s)	350
PspEI	GGTNACC	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	267, 366
Sau3AI	GATC	4 cut(s)	73, 121, 229, 274
SetI	ASST	5 cut(s)	195, 203, 353, 367, 387
SfaNI	GCATC	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	27, 108, 292
SspMI	CTAG	2 cut(s)	198, 362
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	2 cut(s)	195, 353
TaqI	TCGA	2 cut(s)	90, 181
TasI	AATT	3 cut(s)	27, 108, 292
TfiI	GAWTC	4 cut(s)	16, 37, 58, 79
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	50, 321
TseI	GCWGC	2 cut(s)	266, 365
Tsp45I	GTSAC	2 cut(s)	50, 321
TspDTI	ATGAA	2 cut(s)	17, 127
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	111
XhoI	CTCGAG	1 cut(s)	180
XspI	CTAG	2 cut(s)	198, 362
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.