Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000195.1

Orthogroup ID

OG0031041

Physical Location & Seq

Genomic Coordinates Forward (+)

68530 .. 69659

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000195.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaagtacaccgtgagtggagatggagatggagagcttgaacgttggattcttgaatcttggaagcaagtcttcaaggaggatgatggagatgctacatcatggctaattaatccaccagatcaggctttggcgttcatcttggctgacaaagggtttgatgtatggcttgctaatactcgaggaacagacgtctctagccatggacacaaatcacttactactaatgatcctgcttattgggactggacatgggaacagttggctgcttattatcttcctacaggacagaagtcacactatgttggccattccttaggaacgttgacaatgctagctgccttgtcccaacaaaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

4.8

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031041)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000126.1_g000002 Rmu_sc0000195.1_g000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AclI	AACGTT	2 cut(s)	43, 323
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	41, 56, 76
AluBI	AGCT	3 cut(s)	37, 338, 358
AluI	AGCT	3 cut(s)	37, 338, 358
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	266, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AseI	ATTAAT	1 cut(s)	111
AsuNHI	GCTAGC	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	253, 325
BccI	CCATC	3 cut(s)	17, 23, 80
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	198, 335
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	267, 339
BlsI	GCNGC	2 cut(s)	268, 340
BmeT110I	CYCGRG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	253, 325
BshFI	GGCC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	257, 331
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	257, 331
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	121, 229
Bsp19I	CCATGG	1 cut(s)	202
BspANI	GGCC	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	121, 229
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	13, 261
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	171, 336
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	124, 232
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	121, 229
BstPAI	GACNNNNGTC	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	253, 325
BstV2I	GAAGAC	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	171, 336
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	102, 203, 252
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	2 cut(s)	123, 231
DpnII	GATC	2 cut(s)	121, 229
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	3 cut(s)	105, 206, 255
FaiI	YATR	5 cut(s)	103, 166, 204, 253, 303
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	2 cut(s)	257, 331
FatI	CATG	3 cut(s)	101, 202, 251
Fnu4HI	GCNGC	2 cut(s)	267, 339
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	267, 339
FspBI	CTAG	2 cut(s)	198, 335
GluI	GCNGC	2 cut(s)	267, 339
HaeIII	GGCC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	105, 206, 255
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	49, 56
Hpy166II	GTNNAC	2 cut(s)	9, 327
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	9, 327
HpyCH4III	ACNGT	2 cut(s)	13, 261
HpyCH4IV	ACGT	3 cut(s)	43, 192, 323
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	3 cut(s)	43, 192, 323
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	105, 206, 255
Kzo9I	GATC	2 cut(s)	121, 229
LpnPI	CCDG	5 cut(s)	110, 132, 232, 246, 270
Lsp1109I	GCAGC	2 cut(s)	253, 325
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	198, 335
MaeII	ACGT	3 cut(s)	43, 192, 323
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	2 cut(s)	123, 231
MboI	GATC	2 cut(s)	121, 229
MboII	GAAGA	2 cut(s)	64, 269
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	73, 176
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	121, 229
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	105, 206, 255
NmuCI	GTSAC	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	49, 56
PkrI	GCNGC	2 cut(s)	268, 340
PshAI	GACNNNNGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	111
Psp1406I	AACGTT	2 cut(s)	43, 323
PspXI	VCTCGAGB	1 cut(s)	180
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	267, 339
Sau3AI	GATC	2 cut(s)	121, 229
SetI	ASST	6 cut(s)	39, 46, 195, 326, 340, 360
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	108
SspMI	CTAG	2 cut(s)	198, 335
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	13, 261
TaiI	ACGT	3 cut(s)	46, 195, 326
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	49, 56
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	266, 338
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	17, 127
VspI	ATTAAT	1 cut(s)	111
XhoI	CTCGAG	1 cut(s)	180
XspI	CTAG	2 cut(s)	198, 335
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.