Rmu_sc0000126.1_g000002
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000126.1
OG0031041
Physical Location & Seq
Reverse (-)
6638 .. 7439
802 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
atgaaagttggccggaatccggccaaaattggcttgaatccggctaccggtgaccggattccggcgaccagtgatcggattccggcagtcgatgctacatcatggctaattaatccaccagatcaggctttggcgttcatcttggctgacaaagggtttgatgtatggcttgctaatactcgaggaacagacgtctctagctgtggacacaaatcacttactactaatgatcctgcttattgggactggacatgggaacagttggctgcttatgatcttcctgctttgttcaattatgtgaacaagcaaacaggacagaagtcacactatgttggccattccttaggaacgttgacaatgctagctgccttgtcccaacaaaagctgtaa

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

6.81

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 48 - 126 6.4e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0031041)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000126.1_g000002 Rmu_sc0000195.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AclI AACGTT 1 cut(s) 350
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 3 cut(s) 10, 21, 334
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 5 cut(s) 19, 47, 54, 61, 75
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 2 cut(s) 37, 292
AluBI AGCT 3 cut(s) 201, 365, 385
AluI AGCT 3 cut(s) 201, 365, 385
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 3 cut(s) 10, 21, 334
ApeKI GCWGC 2 cut(s) 266, 365
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 1 cut(s) 111
AsiGI ACCGGT 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 343
BalI TGGCCA 1 cut(s) 336
BbvI GCAGC 2 cut(s) 253, 352
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 198, 362
BisI GCNGC 2 cut(s) 267, 366
BlsI GCNGC 2 cut(s) 268, 367
BmeT110I CYCGRG 1 cut(s) 180
BmsI GCATC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 365
BoxI GACNNNNGTC 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 47, 54
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 47, 54, 61, 75
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 69, 251
Bse21I CCTNAGG 1 cut(s) 343
BseLI CCNNNNNNNGG 5 cut(s) 19, 47, 54, 61, 75
BseNI ACTGG 2 cut(s) 69, 251
BseXI GCAGC 2 cut(s) 253, 352
BshFI GGCC 3 cut(s) 12, 23, 336
BshTI ACCGGT 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 7 cut(s) 13, 20, 41, 48, 55, 62, 83
BslFI GGGAC 2 cut(s) 257, 358
BslI CCNNNNNNNGG 5 cut(s) 19, 47, 54, 61, 75
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 257, 358
BsnI GGCC 3 cut(s) 12, 23, 336
BsoBI CYCGRG 1 cut(s) 180
Bsp143I GATC 4 cut(s) 73, 121, 229, 274
BspANI GGCC 3 cut(s) 12, 23, 336
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 2 cut(s) 69, 251
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 4 cut(s) 73, 121, 229, 274
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 171, 363
BstDEI CTNAG 1 cut(s) 343
BstEII GGTNACC 1 cut(s) 50
BstKTI GATC 4 cut(s) 76, 124, 232, 277
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 4 cut(s) 73, 121, 229, 274
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 319
BstPI GGTNACC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 253, 352
Bsu36I CCTNAGG 1 cut(s) 343
BsuRI GGCC 3 cut(s) 12, 23, 336
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 171, 363
Cfr10I RCCGGY 1 cut(s) 47
CspAI ACCGGT 1 cut(s) 47
CviAII CATG 2 cut(s) 102, 252
DdeI CTNAG 1 cut(s) 343
DpnI GATC 4 cut(s) 75, 123, 231, 276
DpnII GATC 4 cut(s) 73, 121, 229, 274
EaeI YGGCCR 3 cut(s) 10, 21, 334
Eco81I CCTNAGG 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 2 cut(s) 105, 255
FaiI YATR 6 cut(s) 103, 166, 253, 273, 297, 330
FaqI GGGAC 2 cut(s) 257, 358
FatI CATG 2 cut(s) 101, 251
Fnu4HI GCNGC 2 cut(s) 267, 366
Fsp4HI GCNGC 2 cut(s) 267, 366
FspBI CTAG 2 cut(s) 198, 362
GluI GCNGC 2 cut(s) 267, 366
HaeIII GGCC 3 cut(s) 12, 23, 336
HapII CCGG 7 cut(s) 13, 20, 41, 48, 55, 62, 83
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 105, 255
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 4 cut(s) 16, 37, 58, 79
HpaII CCGG 7 cut(s) 13, 20, 41, 48, 55, 62, 83
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 3 cut(s) 206, 301, 354
Hpy188I TCNGA 1 cut(s) 78
Hpy8I GTNNAC 3 cut(s) 206, 301, 354
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 2 cut(s) 192, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 2 cut(s) 192, 350
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 105, 255
Kzo9I GATC 4 cut(s) 73, 121, 229, 274
Lsp1109I GCAGC 2 cut(s) 253, 352
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 198, 362
MaeII ACGT 2 cut(s) 192, 350
MaeIII GTNAC 2 cut(s) 50, 321
MalI GATC 4 cut(s) 75, 123, 231, 276
MboI GATC 4 cut(s) 73, 121, 229, 274
MboII GAAGA 1 cut(s) 269
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 3 cut(s) 27, 108, 292
MluNI TGGCCA 1 cut(s) 336
MnlI CCTC 1 cut(s) 176
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 7 cut(s) 13, 20, 41, 48, 55, 62, 83
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 4 cut(s) 73, 121, 229, 274
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 105, 255
NmuCI GTSAC 2 cut(s) 50, 321
PaeR7I CTCGAG 1 cut(s) 180
PfeI GAWTC 4 cut(s) 16, 37, 58, 79
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 2 cut(s) 268, 367
PshAI GACNNNNGTC 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 50
PspXI VCTCGAGB 1 cut(s) 180
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 267, 366
Sau3AI GATC 4 cut(s) 73, 121, 229, 274
SetI ASST 5 cut(s) 195, 203, 353, 367, 387
SfaNI GCATC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 3 cut(s) 27, 108, 292
SspMI CTAG 2 cut(s) 198, 362
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 2 cut(s) 195, 353
TaqI TCGA 2 cut(s) 90, 181
TasI AATT 3 cut(s) 27, 108, 292
TfiI GAWTC 4 cut(s) 16, 37, 58, 79
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 2 cut(s) 50, 321
TseI GCWGC 2 cut(s) 266, 365
Tsp45I GTSAC 2 cut(s) 50, 321
TspDTI ATGAA 2 cut(s) 17, 127
TspRI CASTG 1 cut(s) 76
VspI ATTAAT 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 180
XspI CTAG 2 cut(s) 198, 362
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.