Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000160.1

Orthogroup ID

OG0031046

Physical Location & Seq

Genomic Coordinates Reverse (-)

3314 .. 4901

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgccagagttaaggacacagaatacacatcaagagaaaggcgaagccctgctacagagaagagatgaagtgtttagcgattttgttcgaaggaggatccgacaagcagacgacgaaaaggttgaagccactctgacctacaagtgctatttctttctttttgcagtgtctcttttacttgtgtcaccatggagctgtggaggtccccagagcggtcgcaatctcgtttacgatacaggctgggccccacaagttgccgtatcggctcacccatttgtgggaggatttgtattccattataggtggaattccacgcttgagagtctttggcatggtgtgccggttgccccttggccattgtacgtggagcaacaacttaaagcatttcagctggtgaaggacttggaattggtggtggaaattgatatgagctacaggagcgatagtccagttcttgtgagcgcgaaggagatagagaggaataagagaggtgatgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

167

Amino Acids

19.26

Weight (kDa)

5.82

Isoelectric Point (pI)

69.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031046)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000160.1_g000001 Rmu_sc0011620.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	464
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	91, 104
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	212, 277, 278
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	3 cut(s)	195, 391, 432
AluI	AGCT	3 cut(s)	195, 391, 432
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	91, 104
AoxI	GGCC	2 cut(s)	243, 353
ApaI	GGGCCC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	203, 243, 244
AsuHPI	GGTGA	4 cut(s)	177, 260, 406, 503
AsuII	TTCGAA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	174
BfmI	CTRYAG	2 cut(s)	53, 433
BglI	GCCNNNNNGGC	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	203, 243, 244
BmiI	GGNNCC	4 cut(s)	98, 205, 245, 246
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	188, 350
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 430, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 277, 278
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	188, 350
BseLI	CCNNNNNNNGG	3 cut(s)	212, 277, 278
BseNI	ACTGG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	245, 355
BsiEI	CGRYCG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	212, 277, 278
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	245, 355
Bsp119I	TTCGAA	1 cut(s)	88
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	245, 355
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	4 cut(s)	98, 205, 245, 246
BspPI	GGATC	2 cut(s)	91, 104
BspT104I	TTCGAA	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	188, 350
BssMI	GATC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	188, 350
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 337, 438
BstSFI	CTRYAG	2 cut(s)	53, 433
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	245, 355
BtgI	CCRYGG	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	203, 243, 244
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	189, 332
CviJI	RGCY	9 cut(s)	47, 128, 195, 240, 245, 266, 355, 391, 432
CviKI_1	RGCY	9 cut(s)	47, 128, 195, 240, 245, 266, 355, 391, 432
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	188, 350
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	203, 244
EcoRI	GAATTC	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	188, 350
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	188, 350
FaeI	CATG	2 cut(s)	192, 335
FaiI	YATR	4 cut(s)	190, 300, 333, 428
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	188, 331
FriOI	GRGCYC	1 cut(s)	247
GlaI	GCGC	1 cut(s)	463
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	245, 355
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	192, 335
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	4 cut(s)	177, 260, 406, 503
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	101, 135
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	84, 391, 460
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 337, 438
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	192, 335
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	3 cut(s)	192, 367, 438
LpnPI	CCDG	9 cut(s)	18, 62, 221, 222, 226, 354, 377, 421, 462
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	1 cut(s)	98
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	3 cut(s)	307, 407, 420
MluNI	TGGCCA	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	87, 194, 275, 471, 482
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	2 cut(s)	11, 378
Msp20I	TGGCCA	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	263, 337, 438
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	192, 335
NlaIV	GGNNCC	4 cut(s)	98, 205, 245, 246
NmuCI	GTSAC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	88
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	98, 205, 245, 246
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	3 cut(s)	203, 243, 244
PspPPI	RGGWCCY	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	11, 378
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	3 cut(s)	203, 243, 244
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	9 cut(s)	123, 140, 197, 205, 305, 366, 393, 434, 493
SfcI	CTRYAG	2 cut(s)	53, 433
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	307, 407, 420
SsiI	CCGC	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	188, 350
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	307, 407, 420
Tru1I	TTAA	2 cut(s)	11, 378
Tru9I	TTAA	2 cut(s)	11, 378
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.