Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011620.1

Orthogroup ID

OG0031046

Physical Location & Seq

Genomic Coordinates Reverse (-)

35575 .. 37897

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011620.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggtgctgcgccatcaagacggcaaggactgcatcgagttcaaagactccgacgctgagttgctcatcccgagttttgtcaatcccttgccagctgctaaagtcctacctggcagggcgcgctttctctgccttccacgcctccatctcctcctgctgcgcctctgctcctcatctggaaaacagactcacttttcttcacgcctcacgccttttgcgcttgaaggcgcgcctgacgcgcgcgttttaaaacactggtccttacctcagcttccacctataggtagaattcctccacccataggaagaattgcttttccaagtgactacgatgaccacacagaagtcttgcccaaagggttcctcgatcgaacatttgggattggaaaggtcatatgctgggccccgcaagttaccatctcggctcacccatttttgggaggatttgtattccattataggtggaattccacgcttgagagtctttggcatggtgtgccggttgccccttggccattgtacgtggagcaacaacttaaagcatttcagctggtgaaggacttggaattggtggtggaaattgatatgagctacaggagcgatagtccagttcttgtgagcgcgaaggagatagagaggaataagagaggtgatgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

220

Amino Acids

24.81

Weight (kDa)

7.75

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031046)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000160.1_g000001 Rmu_sc0011620.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
AciI	CCGC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	288, 466
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	4 cut(s)	281, 302, 436, 437
AgsI	TTSAA	2 cut(s)	43, 224
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	95, 271, 550, 591
AluI	AGCT	4 cut(s)	95, 271, 550, 591
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	402, 512
ApaI	GGGCCC	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	7, 95, 157
ApoI	RAATTY	2 cut(s)	288, 466
AscI	GGCGCGCC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	258, 402, 403
AsuHPI	GGTGA	3 cut(s)	419, 565, 662
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	82, 144
BccI	CCATC	3 cut(s)	21, 153, 425
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	279, 592
BisI	GCNGC	3 cut(s)	8, 96, 158
BlsI	GCNGC	3 cut(s)	9, 97, 159
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	258, 402, 403
BmiI	GGNNCC	3 cut(s)	362, 404, 405
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	523
BsaJI	CCNNGG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 589, 619
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 302, 436, 437
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	260, 608
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	281, 302, 436, 437
BseMII	CTCAG	2 cut(s)	48, 281
BseNI	ACTGG	2 cut(s)	260, 608
BsePI	GCGCGC	3 cut(s)	119, 228, 239
BseRI	GAGGAG	2 cut(s)	140, 160
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	82, 144
BseYI	CCCAGC	1 cut(s)	399
Bsh1236I	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	404, 514
BsiEI	CGRYCG	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	4 cut(s)	281, 302, 436, 437
BsnI	GGCC	2 cut(s)	404, 514
BsoBI	CYCGRG	1 cut(s)	70
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	2 cut(s)	404, 514
BspCNI	CTCAG	2 cut(s)	49, 280
BspFNI	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
BspLI	GGNNCC	3 cut(s)	362, 404, 405
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	260, 608
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	509
BssHII	GCGCGC	3 cut(s)	119, 228, 239
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	30, 496
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	4 cut(s)	93, 121, 230, 241
BstDEI	CTNAG	2 cut(s)	57, 267
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 120, 129, 138, 217, 236, 238, 496, 597
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	279, 592
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
BstV1I	GCAGC	2 cut(s)	82, 144
BsuRI	GGCC	2 cut(s)	404, 514
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	93, 121, 230, 241
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	258, 402, 403
CseI	GACGC	2 cut(s)	62, 245
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	7 cut(s)	95, 271, 404, 425, 514, 550, 591
CviKI_1	RGCY	7 cut(s)	95, 271, 404, 425, 514, 550, 591
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	57, 267
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRI	GAATTC	2 cut(s)	288, 466
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	1 cut(s)	494
FaiI	YATR	7 cut(s)	281, 302, 395, 397, 459, 492, 587
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	8, 96, 158
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	8, 96, 158
GluI	GCNGC	3 cut(s)	8, 96, 158
GsaI	CCCAGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	404, 514
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	2 cut(s)	62, 245
Hin1II	CATG	1 cut(s)	494
HinfI	GANTC	3 cut(s)	47, 187, 481
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	3 cut(s)	419, 565, 662
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	17, 70, 177
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	143, 218, 550, 619
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 120, 129, 138, 217, 236, 238, 496, 597
HpyF3I	CTNAG	2 cut(s)	57, 267
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	173, 526, 597
Lsp1109I	GCAGC	2 cut(s)	82, 144
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	323, 412
MalI	GATC	1 cut(s)	369
MauBI	CGCGCGCG	1 cut(s)	239
MboI	GATC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	189, 318
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	514
MluCI	AATT	5 cut(s)	288, 309, 466, 566, 579
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	3 cut(s)	41, 181, 490
MmeI	TCCRAC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	514
MseI	TTAA	2 cut(s)	248, 537
Msp20I	TGGCCA	1 cut(s)	514
MspA1I	CMGCKG	2 cut(s)	95, 550
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	6 cut(s)	121, 230, 239, 241, 243, 623
MwoI	GCNNNNNNNGC	9 cut(s)	30, 120, 129, 138, 217, 236, 238, 496, 597
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	362, 404, 405
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	323
PalAI	GGCGCGCC	1 cut(s)	228
PauI	GCGCGC	3 cut(s)	119, 228, 239
PkrI	GCNGC	3 cut(s)	9, 97, 159
Ple19I	CGATCG	1 cut(s)	370
PleI	GAGTC	3 cut(s)	41, 181, 489
PpsI	GAGTC	3 cut(s)	41, 181, 489
Ppu21I	YACGTR	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	362, 404, 405
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	3 cut(s)	258, 402, 403
PteI	GCGCGC	3 cut(s)	119, 228, 239
PvuI	CGATCG	1 cut(s)	370
PvuII	CAGCTG	2 cut(s)	95, 550
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	248, 537
SatI	GCNGC	3 cut(s)	8, 96, 158
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	3 cut(s)	258, 402, 403
SchI	GAGTC	3 cut(s)	41, 181, 490
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	279, 592
SgsI	GGCGCGCC	1 cut(s)	228
SinI	GGWCC	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	288, 309, 466, 566, 579
SsiI	CCGC	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	509
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	3 cut(s)	36, 366, 370
TasI	AATT	5 cut(s)	288, 309, 466, 566, 579
Tru1I	TTAA	2 cut(s)	248, 537
Tru9I	TTAA	2 cut(s)	248, 537
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	7, 95, 157
Tsp45I	GTSAC	1 cut(s)	323
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	2 cut(s)	288, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.