Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000226.1

Orthogroup ID

OG0031051

Physical Location & Seq

Genomic Coordinates Forward (+)

94279 .. 94593

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000226.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ctgagaaaaggtttggtggcgggaagccgggaattgagtaccctgtgctggcggacgacatgtcccaagactctgttcttcgcgtctctactttataattctacgaccgggcacaaacgcagcgttgctgagttttgtgggaatgtggagctgtgtaggttaactgagcaggtggttttctctaacccttgcaaggtttctgaatatgacataaccgctggattagtccttatctttgctgatgcggaagctttgagggaagacaaagctttgaagattgaagttgatgagctgaagtcccagttttgcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

5.89

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031051)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000226.1_g000021
rosa_samantha	Rh2DG049700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	20, 52, 216, 245
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	48, 193
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	274, 281
AhdI	GACNNNNNGTC	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	151, 251, 269, 292
AluI	AGCT	4 cut(s)	151, 251, 269, 292
Alw26I	GTCTC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	120
AsuC2I	CCSGG	2 cut(s)	29, 109
BaeGI	GKGCMC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	29, 109
BcoDI	GTCTC	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	29, 109
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	29, 109
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	29, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 193
Bse1I	ACTGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	48, 193
BseMII	CTCAG	2 cut(s)	120, 156
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	28, 108
BslFI	GGGAC	2 cut(s)	48, 283
BslI	CCNNNNNNNGG	2 cut(s)	48, 193
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	48, 283
Bsp1286I	GDGCHC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	20, 52, 216, 245
BspCNI	CTCAG	2 cut(s)	121, 157
BspFNI	CGCG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	2, 129, 165
BstFNI	CGCG	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	27, 107
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	50
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	5 cut(s)	27, 151, 251, 269, 292
CviKI_1	RGCY	5 cut(s)	27, 151, 251, 269, 292
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	2, 129, 165
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	314
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	61, 96, 207, 212
FaqI	GGGAC	2 cut(s)	48, 283
FatI	CATG	1 cut(s)	59
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	2 cut(s)	28, 108
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	2 cut(s)	249, 267
HinfI	GANTC	1 cut(s)	70
HpaI	GTTAAC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	28, 108
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	192
HpyF3I	CTNAG	3 cut(s)	2, 129, 165
Hsp92II	CATG	1 cut(s)	63
KspAI	GTTAAC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	34, 41, 56, 121, 155, 204
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	70, 272, 286
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	32, 97
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	28, 108
MspR9I	CCNGG	2 cut(s)	29, 109
MvnI	CGCG	1 cut(s)	83
NciI	CCSGG	2 cut(s)	29, 109
NlaIII	CATG	1 cut(s)	63
NspI	RCATGY	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	160
PciI	ACATGT	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	96
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	29, 109
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	13, 153, 161, 174, 198, 253, 271, 294
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	32, 97
SsiI	CCGC	4 cut(s)	20, 52, 216, 245
StyD4I	CCNGG	2 cut(s)	27, 107
TasI	AATT	2 cut(s)	32, 97
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	1 cut(s)	120
XceI	RCATGY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.