Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0031051

Physical Location & Seq

Genomic Coordinates Reverse (-)

3570717 .. 3571043

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG049700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCATATCATTCTGAGAAAAGGTTTGGTGGCTGGAAGCCGGGAATTGAGTACCCTGTGCTGGCGGACGACATGTCCCAAGACTCTGTTCTTCGCGTCTCTACTTTATAATTCTACGGCGGGGCACAAACGCAGCGTTGCTGAGTTTTGTGGGAATGTGGAGCTGTGTAGGTTAACTGAGCAGGTGGTTTTCTCTGACCCTTGCAAGGTTTCTGAATATAACATAACCGCTGGATTAGTCCTTATCTTTGCTGATGCGGAAGCTTTGAGGGAAGACAAAGCTTTGAAGATTGAAGTTGATGAGCTGAAGTCCCAGTTTTGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

108

Amino Acids

12.09

Weight (kDa)

6.12

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031051)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000226.1_g000021
rosa_samantha	Rh2DG049700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	64, 119, 228, 257
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	60, 205
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	286, 293
AhdI	GACNNNNNGTC	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	163, 263, 281, 304
AluI	AGCT	4 cut(s)	163, 263, 281, 304
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 205
Bse1I	ACTGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	60, 205
BseMII	CTCAG	3 cut(s)	5, 132, 168
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	60, 295
BslI	CCNNNNNNNGG	2 cut(s)	60, 205
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	60, 295
Bsp1286I	GDGCHC	1 cut(s)	126
BspACI	CCGC	4 cut(s)	64, 119, 228, 257
BspCNI	CTCAG	3 cut(s)	6, 133, 169
BspFNI	CGCG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	3 cut(s)	14, 141, 177
BstFNI	CGCG	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	6 cut(s)	32, 39, 163, 263, 281, 304
CviKI_1	RGCY	6 cut(s)	32, 39, 163, 263, 281, 304
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	14, 141, 177
DriI	GACNNNNNGTC	1 cut(s)	72
Eam1105I	GACNNNNNGTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	1 cut(s)	75
FaiI	YATR	5 cut(s)	6, 73, 108, 219, 224
FaqI	GGGAC	2 cut(s)	60, 295
FatI	CATG	1 cut(s)	71
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	133
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	261, 279
HinfI	GANTC	1 cut(s)	82
HpaI	GTTAAC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	3 cut(s)	15, 196, 214
Hpy8I	GTNNAC	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	4, 204
HpyF3I	CTNAG	3 cut(s)	14, 141, 177
Hsp92II	CATG	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	6 cut(s)	18, 46, 53, 68, 167, 216
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	82, 284, 298
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	44, 109
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	95
NciI	CCSGG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	75
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	172
PciI	ACATGT	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	108
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	8 cut(s)	25, 165, 173, 186, 210, 265, 283, 306
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	44, 109
SsiI	CCGC	4 cut(s)	64, 119, 228, 257
StyD4I	CCNGG	1 cut(s)	39
TasI	AATT	2 cut(s)	44, 109
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	1 cut(s)	132
XceI	RCATGY	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.