Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000235.1

Orthogroup ID

OG0019036

Physical Location & Seq

Genomic Coordinates Forward (+)

93576 .. 94070

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcattgcaggcggagcagtaccaggtgggcgcctactacagatcaaataagaatcctcaaggagttttatgacaatggaggtaagaacccaactccagagcaggttcagaggatcactctccagctgaaacagtacggacaggtcgagaacaagaacgtcttttattggttccaaaaccacaagtctcgggagaggcagaagaagaagttaacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtggatccattaatctcaattttgggttaacttgttctgctggtgttggtggatccatcatggaacaacgaggagaagatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagcggttatggcggtggttctcgcatttcccttgagcttagccttaactcctccggagatgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

164

Amino Acids

18.27

Weight (kDa)

7.82

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	8 - 67	3.1e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0180191
rosa_multiflora	Rmu_sc0000235.1_g000032 Rmu_sc0001291.1_g000045 Rmu_sc0002451.1_g000034 Rmu_sc0002557.1_g000012
rosa_rugosa	Rorug02G0268300 Rorug03G0290900 Rorug04G0003400.1 Rorug05G0164000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	3 cut(s)	13, 423, 432
AclWI	GGATC	5 cut(s)	122, 255, 268, 303, 316
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	22, 137
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	23, 339
AluBI	AGCT	2 cut(s)	127, 457
AluI	AGCT	2 cut(s)	127, 457
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	5 cut(s)	122, 255, 268, 303, 316
Ama87I	CYCGRG	1 cut(s)	189
Aor13HI	TCCGGA	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	329, 389
AvaI	CYCGRG	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	2 cut(s)	260, 308
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	407
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	25, 341
BcoDI	GTCTC	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	25, 341
BmeT110I	CYCGRG	1 cut(s)	189
BmiI	GGNNCC	4 cut(s)	33, 173, 262, 310
BmrFI	CCNGG	2 cut(s)	25, 341
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	2 cut(s)	81, 107
Bpu1102I	GCTNAGC	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	44, 473
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	4
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	25, 341
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	4
BseRI	GAGGAG	2 cut(s)	342, 460
BseSI	GKGCMC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
Bsp1720I	GCTNAGC	1 cut(s)	458
BspACI	CCGC	3 cut(s)	13, 423, 432
BspEI	TCCGGA	1 cut(s)	473
BspLI	GGNNCC	4 cut(s)	33, 173, 262, 310
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	5 cut(s)	122, 255, 268, 303, 316
BspT107I	GGYRCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	25, 341
Bst4CI	ACNGT	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	458, 492
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	6 cut(s)	46, 117, 245, 263, 311, 337
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 15, 429, 488
BstNI	CCWGG	2 cut(s)	25, 341
BstSCI	CCNGG	2 cut(s)	23, 339
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	2 cut(s)	260, 308
BstYI	RGATCY	2 cut(s)	260, 308
BtsCI	GGATG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	34
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	21, 136
CviAII	CATG	7 cut(s)	227, 235, 316, 370, 374, 397, 487
CviJI	RGCY	5 cut(s)	127, 250, 457, 462, 491
CviKI_1	RGCY	5 cut(s)	127, 250, 457, 462, 491
CviQI	GTAC	2 cut(s)	21, 136
DdeI	CTNAG	2 cut(s)	458, 492
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	6 cut(s)	45, 116, 244, 262, 310, 336
DpnII	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
EciI	GGCGGA	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	23, 339
EcoT22I	ATGCAT	2 cut(s)	6, 375
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FaeI	CATG	7 cut(s)	230, 238, 319, 373, 377, 400, 490
FaiI	YATR	9 cut(s)	72, 228, 236, 317, 371, 375, 398, 429, 488
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	7 cut(s)	226, 234, 315, 369, 373, 396, 486
FokI	GGATG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	33
GsuI	CTGGAG	2 cut(s)	81, 107
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	1 cut(s)	474
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	7 cut(s)	230, 238, 319, 373, 377, 400, 490
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	2 cut(s)	213, 285
HindII	GTYRAC	2 cut(s)	213, 285
HinfI	GANTC	1 cut(s)	54
HpaI	GTTAAC	2 cut(s)	213, 285
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	329, 389
Hpy166II	GTNNAC	2 cut(s)	213, 285
Hpy188I	TCNGA	3 cut(s)	111, 220, 412
Hpy188III	TCNNGA	4 cut(s)	98, 148, 191, 474
Hpy8I	GTNNAC	2 cut(s)	213, 285
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	4, 9, 238, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 15, 429, 488
HpyF3I	CTNAG	2 cut(s)	458, 492
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	7 cut(s)	230, 238, 319, 373, 377, 400, 490
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	473
KspAI	GTTAAC	2 cut(s)	213, 285
Kzo9I	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
LmnI	GCTCC	1 cut(s)	15
LweI	GCATC	1 cut(s)	469
MabI	ACCWGGT	1 cut(s)	23
MaeII	ACGT	1 cut(s)	159
MalI	GATC	6 cut(s)	45, 116, 244, 262, 310, 336
MboI	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
MboII	GAAGA	4 cut(s)	214, 217, 344, 412
MflI	RGATCY	2 cut(s)	260, 308
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	274
Mly113I	GGCGCC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	68, 74, 105, 189, 320, 373, 406, 410, 481
Mph1103I	ATGCAT	2 cut(s)	6, 375
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	4 cut(s)	212, 267, 284, 465
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	25, 341
MvaI	CCWGG	2 cut(s)	25, 341
MwoI	GCNNNNNNNGC	4 cut(s)	10, 15, 429, 488
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
NlaIII	CATG	7 cut(s)	230, 238, 319, 373, 377, 400, 490
NlaIV	GGNNCC	4 cut(s)	33, 173, 262, 310
NsiI	ATGCAT	2 cut(s)	6, 375
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	54
PluTI	GGCGCC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	23, 339
PspGI	CCWGG	2 cut(s)	23, 339
PspN4I	GGNNCC	4 cut(s)	33, 173, 262, 310
PsuI	RGATCY	2 cut(s)	260, 308
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	22, 137
RsaNI	GTAC	2 cut(s)	21, 136
SaqAI	TTAA	4 cut(s)	212, 267, 284, 465
Sau3AI	GATC	6 cut(s)	43, 114, 242, 260, 308, 334
ScrFI	CCNGG	2 cut(s)	25, 341
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	8 cut(s)	29, 85, 108, 129, 147, 162, 421, 459
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	59, 452
SmoI	CTYRAG	2 cut(s)	59, 452
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	3 cut(s)	13, 423, 432
SspDI	GGCGCC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	23, 339
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	4 cut(s)	212, 267, 284, 465
Tru9I	TTAA	4 cut(s)	212, 267, 284, 465
TspDTI	ATGAA	2 cut(s)	215, 413
TspGWI	ACGGA	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	354
Zsp2I	ATGCAT	2 cut(s)	6, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.