Rmu_sc0000255.1_g000038

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000255.1
Physical Location & Seq
Forward (+)
201279 .. 201671
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000255.1_g000038.1.cds

Sequence Viewer

Length: 393 bp
atgactcggcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgttcgtgactccctgcttcttgacctagaagtaagatggcagagcctccgcttctgtgacttcaactcagttcttgactacaactcagaagcacttcgcattaaattcttaatggaattctgtagtaaagagatcacaaatgcgatgttgattaagaagactctctctaccttccacgtctccgcattgatggttgctaagaactatcgaattgatgttactgcaggacggatcacaaggtttcatgagctcattggagctatgaatgtcgctgaaaagcatgacaacaccttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

15.4

Weight (kDa)

5.79

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000255.1_g000038 Rmu_sc0000857.1_g000055

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 145, 279
AclI AACGTT 1 cut(s) 96
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 200, 212
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 346, 356
AluI AGCT 2 cut(s) 346, 356
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 76, 280
AlwI GGATC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 200, 212
Asp700I GAANNNNTTC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 57, 260
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 126, 280
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 217, 318
BmgBI CACGTC 1 cut(s) 274
BpiI GAAGAC 2 cut(s) 57, 260
BpmI CTGGAG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 177, 195
BseNI ACTGG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 76, 280
BsmBI CGTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 228, 327
BspACI CCGC 2 cut(s) 145, 279
BspCNI CTCAG 2 cut(s) 176, 194
BspHI TCATGA 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 28
BssMI GATC 2 cut(s) 228, 327
BstDEI CTNAG 3 cut(s) 163, 181, 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 231, 330
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 2 cut(s) 228, 327
BstSFI CTRYAG 2 cut(s) 217, 318
BstV2I GAAGAC 2 cut(s) 57, 260
BtgZI GCGATG 1 cut(s) 254
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 22
CciI TCATGA 1 cut(s) 340
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 341, 377
CviJI RGCY 4 cut(s) 64, 141, 346, 356
CviKI_1 RGCY 4 cut(s) 64, 141, 346, 356
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 163, 181, 294
DpnI GATC 2 cut(s) 230, 329
DpnII GATC 2 cut(s) 228, 327
DraIII CACNNNGTG 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 344, 380
FaiI YATR 7 cut(s) 12, 14, 39, 41, 342, 359, 378
FatI CATG 2 cut(s) 340, 376
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 11
Hin1II CATG 2 cut(s) 344, 380
HinfI GANTC 4 cut(s) 4, 20, 104, 256
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 101, 116, 170, 341
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4IV ACGT 2 cut(s) 96, 273
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 163, 181, 294
HpySE526I ACGT 2 cut(s) 96, 273
Hsp92II CATG 2 cut(s) 344, 380
Kzo9I GATC 2 cut(s) 228, 327
LmnI GCTCC 2 cut(s) 30, 353
LpnPI CCDG 4 cut(s) 41, 70, 122, 306
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 96, 273
MaeIII GTNAC 3 cut(s) 101, 152, 313
MalI GATC 2 cut(s) 230, 329
MboI GATC 2 cut(s) 228, 327
MboII GAAGA 4 cut(s) 59, 62, 92, 265
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 200, 212, 306
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 198, 206, 249
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 228, 327
NlaIII CATG 2 cut(s) 344, 380
NmuCI GTSAC 2 cut(s) 101, 152
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
Psp124BI GAGCTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 96
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 198, 206, 249
Sau3AI GATC 2 cut(s) 228, 327
SchI GAGTC 2 cut(s) 98, 250
SduI GDGCHC 1 cut(s) 348
SetI ASST 8 cut(s) 99, 123, 269, 276, 338, 348, 358, 389
SfcI CTRYAG 2 cut(s) 217, 318
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 200, 212, 306
SsiI CCGC 2 cut(s) 145, 279
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 348
TaiI ACGT 2 cut(s) 99, 276
TaqI TCGA 2 cut(s) 78, 304
TasI AATT 3 cut(s) 200, 212, 306
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 198, 206, 249
Tru9I TTAA 3 cut(s) 198, 206, 249
TseFI GTSAC 2 cut(s) 101, 152
Tsp45I GTSAC 2 cut(s) 101, 152
TspDTI ATGAA 4 cut(s) 56, 60, 329, 374
TspGWI ACGGA 1 cut(s) 340
XapI RAATTY 2 cut(s) 200, 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.