Rmu_sc0000857.1_g000055

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000857.1
Physical Location & Seq
Reverse (-)
216976 .. 217356
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000857.1_g000055.1.cds

Sequence Viewer

Length: 381 bp
atggatgattttctccgatacgagtatatgaacgaagaagaccttagaaggctgtgggtctcacttgaagaaaaatttggcaacgtccatgactccatgcttcctaaactagaagtgagatggcatagcttccgcttctgtgatttcaattcagttattgactacaactcagaagcacttcgcattaaattcttaatggaattctgtggaaaagatatcatagatactatgttgattgagaggactctctctaccttctccgtctctgctttgatggttgcaaaaacctatcaaatcgatgttattgcaggacagatcacaaggtttcatgagctcattggagttatgaacgtcgttgaaaagcatgacaacatcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.98

Weight (kDa)

5.01

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031052)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000255.1_g000038 Rmu_sc0000857.1_g000055

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AcsI RAATTY 3 cut(s) 74, 188, 200
AgsI TTSAA 3 cut(s) 68, 148, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 129, 334
AluI AGCT 2 cut(s) 129, 334
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 64, 268
ApoI RAATTY 3 cut(s) 74, 188, 200
Asp700I GAANNNNTTC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 2 cut(s) 114, 268
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 2 cut(s) 64, 268
BfaI CTAG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 64
BssMI GATC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 44, 169
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 4 cut(s) 89, 97, 329, 365
CviJI RGCY 3 cut(s) 52, 129, 334
CviKI_1 RGCY 3 cut(s) 52, 129, 334
DdeI CTNAG 2 cut(s) 44, 169
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 200
EcoRV GATATC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 4 cut(s) 92, 100, 332, 368
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 4 cut(s) 88, 96, 328, 364
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 336
FspBI CTAG 1 cut(s) 110
Hin1II CATG 4 cut(s) 92, 100, 332, 368
HinfI GANTC 2 cut(s) 92, 244
Hpy188I TCNGA 2 cut(s) 17, 172
Hpy188III TCNNGA 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 42, 265
HpyCH4IV ACGT 2 cut(s) 84, 351
HpyCH4V TGCA 2 cut(s) 281, 308
HpyF3I CTNAG 2 cut(s) 44, 169
HpySE526I ACGT 2 cut(s) 84, 351
Hsp92II CATG 4 cut(s) 92, 100, 332, 368
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 1 cut(s) 294
MaeI CTAG 1 cut(s) 110
MaeII ACGT 2 cut(s) 84, 351
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 3 cut(s) 47, 50, 80
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 74, 148, 188, 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 186, 194
NdeII GATC 1 cut(s) 315
NlaIII CATG 4 cut(s) 92, 100, 332, 368
PagI TCATGA 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 177
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
Psp124BI GAGCTC 1 cut(s) 336
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 186, 194
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 2 cut(s) 86, 238
SduI GDGCHC 1 cut(s) 336
SetI ASST 8 cut(s) 45, 87, 131, 257, 290, 326, 336, 354
SgeI CNNG 9 cut(s) 34, 77, 101, 109, 122, 321, 333, 341, 377
Sse9I AATT 4 cut(s) 74, 148, 188, 200
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 336
TaiI ACGT 2 cut(s) 87, 354
TaqI TCGA 1 cut(s) 297
TasI AATT 4 cut(s) 74, 148, 188, 200
Tru1I TTAA 2 cut(s) 186, 194
Tru9I TTAA 2 cut(s) 186, 194
TspDTI ATGAA 3 cut(s) 44, 317, 362
TspGWI ACGGA 1 cut(s) 250
XapI RAATTY 3 cut(s) 74, 188, 200
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.