Rmu_sc0000268.1_g000005

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000268.1
OG0031055
Physical Location & Seq
Reverse (-)
7656 .. 9027
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000268.1_g000005.1.cds

Sequence Viewer

Length: 579 bp
atgctgacccactcgtcaagggccgctgctctcttcctcttttttctcctaacgctcaccatcctcctctccgagtgctccccttctctgctgcccctctccaccgatctcatcttcggcctcaccgccgcactcttctatatccactccttcatatctcgagaagctgcctccgtccagacctccgatctacaggccaagtgcgaagaatggatttgtttcaggttgccgtttaatctgagctcatggccgaccttgacccaacaacttccaattctcgccgctcccgccgtcgaaactcttcttgattcggaccttgggataaggagaggagggaggcttaggatgagtaacctgaacaaattggactttgctctattgggaacaactggctctggatatcacaggtgggttagtgatgtccgccagcatctcaaggccgatggaatcctggatacgattctcgagcctagccaagacgtgctaactgttgagcaagctcaaactttggaagcaaatagtgcagccttagaggcaaataaggcaaaagccaacatcctaatgactcgtaactgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

192

Amino Acids

21.14

Weight (kDa)

5.77

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031055)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000268.1_g000005
rosa_samantha Rh4DG150500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 284
AciI CCGC 6 cut(s) 24, 126, 129, 282, 288, 424
AcoI YGGCCR 1 cut(s) 248
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 3 cut(s) 167, 243, 500
AluI AGCT 3 cut(s) 167, 243, 500
Alw21I GWGCWC 2 cut(s) 80, 245
Ama87I CYCGRG 2 cut(s) 159, 464
AoxI GGCC 5 cut(s) 21, 118, 195, 248, 438
ApeKI GCWGC 4 cut(s) 26, 91, 167, 524
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 21, 313
AsuHPI GGTGA 2 cut(s) 49, 115
AvaI CYCGRG 2 cut(s) 159, 464
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 80, 245
BbvI GCAGC 4 cut(s) 13, 78, 154, 536
BccI CCATC 2 cut(s) 68, 437
BceAI ACGGC 2 cut(s) 214, 275
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 1 cut(s) 448
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 448
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 7 cut(s) 24, 27, 92, 129, 168, 282, 525
BlsI GCNGC 7 cut(s) 25, 28, 93, 130, 169, 283, 526
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 159, 464
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 21, 313
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 3 cut(s) 60, 351, 555
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 56, 345
BseXI GCAGC 4 cut(s) 13, 78, 154, 536
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 5 cut(s) 23, 120, 197, 250, 440
BsiHKAI GWGCWC 2 cut(s) 80, 245
BsiHKCI CYCGRG 2 cut(s) 159, 464
BsnI GGCC 5 cut(s) 23, 120, 197, 250, 440
BsoBI CYCGRG 2 cut(s) 159, 464
Bsp1286I GDGCHC 2 cut(s) 80, 245
Bsp143I GATC 2 cut(s) 106, 187
BspACI CCGC 6 cut(s) 24, 126, 129, 282, 288, 424
BspANI GGCC 5 cut(s) 23, 120, 197, 250, 440
BspCNI CTCAG 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 2 cut(s) 106, 187
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 490, 575
Bst6I CTCTTC 3 cut(s) 38, 140, 306
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 428, 498
BstDEI CTNAG 3 cut(s) 239, 341, 529
BstF5I GGATG 3 cut(s) 60, 351, 555
BstKTI GATC 2 cut(s) 109, 190
BstMBI GATC 2 cut(s) 106, 187
BstMWI GCNNNNNNNGC 4 cut(s) 287, 521, 533, 542
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 13, 78, 154, 536
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 5 cut(s) 23, 120, 197, 250, 440
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 3 cut(s) 60, 351, 555
Cac8I GCNNGC 2 cut(s) 428, 498
Cfr13I GGNCC 2 cut(s) 21, 313
CviAII CATG 1 cut(s) 246
DdeI CTNAG 3 cut(s) 239, 341, 529
DpnI GATC 2 cut(s) 108, 189
DpnII GATC 2 cut(s) 106, 187
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 3 cut(s) 38, 140, 306
EarI CTCTTC 3 cut(s) 38, 140, 306
EciI GGCGGA 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 243
Eco88I CYCGRG 2 cut(s) 159, 464
EcoICRI GAGCTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 249
FaiI YATR 3 cut(s) 141, 155, 247
FatI CATG 1 cut(s) 245
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 7 cut(s) 24, 27, 92, 129, 168, 282, 525
FokI GGATG 3 cut(s) 47, 358, 542
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 7 cut(s) 24, 27, 92, 129, 168, 282, 525
FspBI CTAG 1 cut(s) 471
GluI GCNGC 7 cut(s) 24, 27, 92, 129, 168, 282, 525
HaeIII GGCC 5 cut(s) 23, 120, 197, 250, 440
Hin1II CATG 1 cut(s) 249
HinfI GANTC 4 cut(s) 308, 447, 460, 565
HphI GGTGA 2 cut(s) 49, 115
Hpy188I TCNGA 4 cut(s) 73, 187, 240, 313
Hpy188III TCNNGA 6 cut(s) 159, 161, 178, 305, 396, 464
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 93, 160
HpyCH4III ACNGT 2 cut(s) 490, 575
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 521, 533, 542
HpyF3I CTNAG 3 cut(s) 239, 341, 529
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 2 cut(s) 106, 187
LmnI GCTCC 2 cut(s) 83, 289
Lsp1109I GCAGC 4 cut(s) 13, 78, 154, 536
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 350, 569
MalI GATC 2 cut(s) 108, 189
MbiI CCGCTC 1 cut(s) 284
MboI GATC 2 cut(s) 106, 187
MboII GAAGA 5 cut(s) 25, 106, 127, 218, 293
MhlI GDGCHC 2 cut(s) 80, 245
MluCI AATT 2 cut(s) 273, 362
MlyI GAGTC 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 287, 521, 533, 542
NdeII GATC 2 cut(s) 106, 187
NlaIII CATG 1 cut(s) 249
PaeR7I CTCGAG 2 cut(s) 159, 464
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 308, 447, 460
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 7 cut(s) 25, 28, 93, 130, 169, 283, 526
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 2 cut(s) 21, 313
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 7 cut(s) 24, 27, 92, 129, 168, 282, 525
Sau3AI GATC 2 cut(s) 106, 187
Sau96I GGNCC 2 cut(s) 21, 313
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 2 cut(s) 80, 245
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 191
Sfr274I CTCGAG 2 cut(s) 159, 464
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 2 cut(s) 159, 464
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 3 cut(s) 159, 434, 464
SmoI CTYRAG 3 cut(s) 159, 434, 464
Sse9I AATT 2 cut(s) 273, 362
SsiI CCGC 6 cut(s) 24, 126, 129, 282, 288, 424
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 490, 575
TaiI ACGT 1 cut(s) 483
TaqI TCGA 3 cut(s) 160, 294, 465
TasI AATT 2 cut(s) 273, 362
TauI GCSGC 3 cut(s) 26, 131, 284
TfiI GAWTC 3 cut(s) 308, 447, 460
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 4 cut(s) 26, 91, 167, 524
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 313
XhoI CTCGAG 2 cut(s) 159, 464
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.