Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000278.1

Orthogroup ID

OG0031057

Physical Location & Seq

Genomic Coordinates Reverse (-)

82046 .. 83048

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000278.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggcctcctctttcgggagcttggacacctccgcaaattctcacccgagcaacttcaccttctccacccacccattcatgaccacctccttctccgacctcttatcctcgggcgccgacaccacaaacccaatagccaccgcaacccgaaactccgggtacgggttatcggatcgtattgcggagcgaacggggtcgggtgtccccaagttcaagtccctcccgcctccccagctccccatttcgcctccctctgttgtgtctccctcttcctactttgcaatcccacctgggatgagccccgccgagcttctcgactctcctgtgcttctcagctcttccaacattcttccatctccaactactgggagttttgcagctcaagcctttaattggaggaccaattctggttctggtaccaacaacaataacaacaaccggagtgttaaagaggagcacaagaactactcagatttctctttccaaacccaaaccagggcccctccaacttcatcatcagcaattttccaatcctcgaacagcaattttcctcatcattgccattcaaatcaatctccactttcgactcttgcttcaccgaaaccaaatcctccagaaaaccaaatccacatatcctcaatctccaattctccatatcctggctctcttctcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

225

Amino Acids

23.79

Weight (kDa)

7.06

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031057)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000278.1_g000019 Rmu_sc0027610.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	113, 416
AccB7I	CCANNNNNTGG	2 cut(s)	365, 659
AciI	CCGC	5 cut(s)	33, 141, 182, 224, 303
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	161, 418
AfiI	CCNNNNNNNGG	7 cut(s)	15, 162, 365, 393, 495, 496, 659
AgsI	TTSAA	2 cut(s)	214, 567
AjnI	CCWGG	3 cut(s)	289, 494, 658
AluBI	AGCT	5 cut(s)	21, 235, 310, 336, 380
AluI	AGCT	5 cut(s)	21, 235, 310, 336, 380
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	180
Ama87I	CYCGRG	2 cut(s)	46, 109
AoxI	GGCC	2 cut(s)	3, 498
ApaI	GGGCCC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	399, 498, 499
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	35, 49, 588
AvaI	CYCGRG	2 cut(s)	46, 109
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	2 cut(s)	113, 416
BanII	GRGCYC	2 cut(s)	302, 502
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	3 cut(s)	291, 496, 660
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	676
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	4 cut(s)	157, 291, 496, 660
Bme18I	GGWCC	1 cut(s)	399
BmeT110I	CYCGRG	2 cut(s)	46, 109
BmgT120I	GGNCC	3 cut(s)	399, 498, 499
BmiI	GGNNCC	4 cut(s)	115, 418, 500, 501
BmrFI	CCNGG	4 cut(s)	157, 291, 496, 660
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	108, 290, 495
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 162, 365, 393, 495, 496, 659
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	291, 496, 660
BseDI	CCNNGG	3 cut(s)	108, 290, 495
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	7 cut(s)	15, 162, 365, 393, 495, 496, 659
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	346, 483
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	5, 500
BshNI	GGYRCC	2 cut(s)	113, 416
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	46, 109
BsiSI	CCGG	2 cut(s)	156, 439
BslFI	GGGAC	2 cut(s)	188, 202
BslI	CCNNNNNNNGG	7 cut(s)	15, 162, 365, 393, 495, 496, 659
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	188, 202
BsnI	GGCC	2 cut(s)	5, 500
BsoBI	CYCGRG	2 cut(s)	46, 109
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	3 cut(s)	302, 459, 502
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	5 cut(s)	33, 141, 182, 224, 303
BspANI	GGCC	2 cut(s)	5, 500
BspCNI	CTCAG	2 cut(s)	345, 482
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	115, 418, 500, 501
BspPI	GGATC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	113, 416
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	108, 290, 495
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	291, 496, 660
Bst6I	CTCTTC	3 cut(s)	274, 343, 672
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	332, 469
BstF5I	GGATG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 383
BstNI	CCWGG	3 cut(s)	291, 496, 660
BstSCI	CCNGG	4 cut(s)	155, 289, 494, 658
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	5, 500
BtsCI	GGATG	1 cut(s)	300
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	399, 498, 499
Csp6I	GTAC	2 cut(s)	160, 417
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	2 cut(s)	160, 417
DdeI	CTNAG	2 cut(s)	332, 469
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	3 cut(s)	274, 343, 672
EarI	CTCTTC	3 cut(s)	274, 343, 672
Eco24I	GRGCYC	2 cut(s)	302, 502
Eco47I	GGWCC	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	46, 109
EcoO109I	RGGNCCY	2 cut(s)	498, 499
EcoRII	CCWGG	3 cut(s)	289, 494, 658
EcoT38I	GRGCYC	2 cut(s)	302, 502
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FaeI	CATG	1 cut(s)	82
FaiI	YATR	3 cut(s)	80, 632, 655
FaqI	GGGAC	2 cut(s)	188, 202
FatI	CATG	1 cut(s)	78
FauI	CCCGC	2 cut(s)	231, 310
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	2 cut(s)	302, 502
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	5, 500
HapII	CCGG	2 cut(s)	156, 439
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	317, 586
HpaII	CCGG	2 cut(s)	156, 439
HphI	GGTGA	3 cut(s)	35, 49, 588
Hpy188I	TCNGA	3 cut(s)	97, 172, 472
Hpy188III	TCNNGA	4 cut(s)	16, 79, 314, 614
HpyAV	CCTTC	2 cut(s)	70, 100
HpyCH4V	TGCA	2 cut(s)	281, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 383
HpyF3I	CTNAG	2 cut(s)	332, 469
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	420
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	4 cut(s)	18, 184, 240, 454
Lsp1109I	GCAGC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	676
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	261, 330, 341, 659
MhlI	GDGCHC	3 cut(s)	302, 459, 502
MluCI	AATT	6 cut(s)	37, 391, 403, 522, 544, 646
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	2 cut(s)	311, 580
MmeI	TCCRAC	4 cut(s)	120, 366, 383, 530
MseI	TTAA	2 cut(s)	390, 447
MspI	CCGG	2 cut(s)	156, 439
MspR9I	CCNGG	4 cut(s)	157, 291, 496, 660
MvaI	CCWGG	3 cut(s)	291, 496, 660
MwoI	GCNNNNNNNGC	2 cut(s)	232, 383
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	115, 418, 500, 501
NmeAIII	GCCGAG	1 cut(s)	331
PagI	TCATGA	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	343
PflMI	CCANNNNNTGG	2 cut(s)	365, 659
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	2 cut(s)	311, 580
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	2 cut(s)	311, 580
Psp6I	CCWGG	3 cut(s)	289, 494, 658
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	3 cut(s)	289, 494, 658
PspN4I	GGNNCC	4 cut(s)	115, 418, 500, 501
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	399, 498, 499
RsaI	GTAC	2 cut(s)	161, 418
RsaNI	GTAC	2 cut(s)	160, 417
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	390, 447
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	3 cut(s)	399, 498, 499
SchI	GAGTC	2 cut(s)	311, 580
ScrFI	CCNGG	4 cut(s)	157, 291, 496, 660
SduI	GDGCHC	3 cut(s)	302, 459, 502
SfoI	GGCGCC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	6 cut(s)	37, 391, 403, 522, 544, 646
SsiI	CCGC	5 cut(s)	33, 141, 182, 224, 303
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	4 cut(s)	155, 289, 494, 658
TaqI	TCGA	3 cut(s)	315, 536, 584
TasI	AATT	6 cut(s)	37, 391, 403, 522, 544, 646
Tru1I	TTAA	2 cut(s)	390, 447
Tru9I	TTAA	2 cut(s)	390, 447
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	67, 501
Van91I	CCANNNNNTGG	2 cut(s)	365, 659
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.