Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027610.1

Orthogroup ID

OG0031057

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 771

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

cgcctccccagctccccatttcgcctccctctgttgtgtctccctcttcctactttgcaatcccacctgggatgagccccgtcgagcttctcgactcttctgtgcttctcagctcttccaatattcttccatctccaactactgggaattttgcagctcaagcctttaattggaggaccaattctggttctggtaccaacaacaaccggagtgttaaagaggagcacaagaactactcagatttctctttccaaacccaaaccagggcccctccaacttcatcatcagcaattttccaatcctcgaacagcaattttcctcatcattgccattcaaatcaatctctactttcgactcttgcttcaccgaaaccaaatcctccagaaaaccaaatccacatatcctcaatctccaattctccatatcctggctctcttctcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

147

Amino Acids

15.69

Weight (kDa)

7.47

Isoelectric Point (pI)

77.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031057)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000278.1_g000019 Rmu_sc0027610.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	2 cut(s)	142, 427
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	5 cut(s)	142, 170, 263, 264, 427
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	66, 262, 426
AluBI	AGCT	4 cut(s)	12, 87, 113, 157
AluI	AGCT	4 cut(s)	12, 87, 113, 157
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	266
ApaI	GGGCCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	147
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	176, 266, 267
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	79, 270
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	3 cut(s)	68, 264, 428
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	68, 264, 428
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	176, 266, 267
BmiI	GGNNCC	3 cut(s)	195, 268, 269
BmrFI	CCNGG	3 cut(s)	68, 264, 428
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	67, 263
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 170, 263, 264, 427
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	68, 264, 428
BseDI	CCNNGG	2 cut(s)	67, 263
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	5 cut(s)	142, 170, 263, 264, 427
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	123, 251
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	5 cut(s)	142, 170, 263, 264, 427
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	268
Bsp120I	GGGCCC	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	79, 227, 270
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	122, 250
BspLI	GGNNCC	3 cut(s)	195, 268, 269
BspQI	GCTCTTC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	67, 263
Bst2UI	CCWGG	3 cut(s)	68, 264, 428
Bst6I	CTCTTC	4 cut(s)	51, 102, 120, 440
BstDEI	CTNAG	2 cut(s)	109, 237
BstF5I	GGATG	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	9, 160
BstNI	CCWGG	3 cut(s)	68, 264, 428
BstSCI	CCNGG	3 cut(s)	66, 262, 426
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	176, 266, 267
Csp6I	GTAC	1 cut(s)	194
CviJI	RGCY	8 cut(s)	12, 77, 87, 113, 157, 163, 268, 431
CviKI_1	RGCY	8 cut(s)	12, 77, 87, 113, 157, 163, 268, 431
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	109, 237
Eam1104I	CTCTTC	4 cut(s)	51, 102, 120, 440
EarI	CTCTTC	4 cut(s)	51, 102, 120, 440
Eco24I	GRGCYC	2 cut(s)	79, 270
Eco47I	GGWCC	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	266, 267
EcoRII	CCWGG	3 cut(s)	66, 262, 426
EcoT38I	GRGCYC	2 cut(s)	79, 270
FaiI	YATR	2 cut(s)	400, 423
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	2 cut(s)	79, 270
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	207
HinfI	GANTC	2 cut(s)	94, 354
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	91, 382
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	58, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	9, 160
HpyF3I	CTNAG	2 cut(s)	109, 237
KpnI	GGTACC	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	17, 222
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	444
MboII	GAAGA	5 cut(s)	38, 89, 107, 118, 427
MhlI	GDGCHC	3 cut(s)	79, 227, 270
MluCI	AATT	6 cut(s)	147, 168, 180, 290, 312, 414
MlyI	GAGTC	2 cut(s)	88, 348
MmeI	TCCRAC	2 cut(s)	160, 298
MseI	TTAA	2 cut(s)	167, 215
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	68, 264, 428
MvaI	CCWGG	3 cut(s)	68, 264, 428
MwoI	GCNNNNNNNGC	2 cut(s)	9, 160
NlaIV	GGNNCC	3 cut(s)	195, 268, 269
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PflMI	CCANNNNNTGG	2 cut(s)	142, 427
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	2 cut(s)	88, 348
PpsI	GAGTC	2 cut(s)	88, 348
Psp6I	CCWGG	3 cut(s)	66, 262, 426
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	3 cut(s)	66, 262, 426
PspN4I	GGNNCC	3 cut(s)	195, 268, 269
PspOMI	GGGCCC	1 cut(s)	266
PspPI	GGNCC	3 cut(s)	176, 266, 267
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	167, 215
SatI	GCNGC	1 cut(s)	155
Sau96I	GGNCC	3 cut(s)	176, 266, 267
SchI	GAGTC	2 cut(s)	88, 348
ScrFI	CCNGG	3 cut(s)	68, 264, 428
SduI	GDGCHC	3 cut(s)	79, 227, 270
SetI	ASST	5 cut(s)	14, 69, 89, 115, 159
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	6 cut(s)	147, 168, 180, 290, 312, 414
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	66, 262, 426
TaqI	TCGA	4 cut(s)	83, 92, 304, 352
TasI	AATT	6 cut(s)	147, 168, 180, 290, 312, 414
Tru1I	TTAA	2 cut(s)	167, 215
Tru9I	TTAA	2 cut(s)	167, 215
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	269
Van91I	CCANNNNNTGG	2 cut(s)	142, 427
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	147
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.