Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000298.1

Orthogroup ID

OG0024295

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1264

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000298.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 533 bp

gaccaggatcagaacttaagcagaaatttcttagatgcaagaccttcaggttacatggcaatatggagcaagtggatcgaagaaccacattcgagacctttaaaacagaaaaatcagctcttcttttgtccacagatgtttctgccagaggtttggatttccccaaagttagatgtatcatacagtatgattctccaggcgaggctactgaatatgtgcatagggttggcagaacagctcggctgggtgaaagaggagattcaatattatttttacagccaattgaaatcgattatttgaaagaattggagaagcatggtgtttctctagtagagtatcctctcctcaaagtattagatagtttcccactatatggtcagcagcatgtcaggaagtttgtttccattgatgcacatccttgggtgctggctttgcaaaaggcacttgaagcgtttacagatcaggtagttcatttctcccgagttttcttaatgtgccttaaagtaagcgtaaatgtgctgtgctttagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

176

Amino Acids

20.22

Weight (kDa)

8.74

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024295)

Species	Orthologous Gene IDs
malus_domestica	MD15G1221600.v1.1
rosa_multiflora	Rmu_sc0000298.1_g000001 Rmu_sc0036117.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AclWI	GGATC	2 cut(s)	15, 83
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	263, 286, 300, 448
AjnI	CCWGG	2 cut(s)	3, 195
AluBI	AGCT	3 cut(s)	118, 238, 530
AluI	AGCT	3 cut(s)	118, 238, 530
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	15, 83
Ama87I	CYCGRG	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	2 cut(s)	5, 197
BciVI	GTATCC	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	328, 531
BfrI	CTTAAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	2 cut(s)	5, 197
BmeT110I	CYCGRG	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	5, 197
BmsI	GCATC	2 cut(s)	25, 399
BpmI	CTGGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	5, 197
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	269, 334
BseXI	GCAGC	1 cut(s)	393
BseYI	CCCAGC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	7, 75, 459
BspDI	ATCGAT	1 cut(s)	290
BspPI	GGATC	2 cut(s)	15, 83
BspQI	GCTCTTC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	3 cut(s)	7, 75, 459
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	5, 197
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	3 cut(s)	10, 78, 462
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	7, 75, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 448
BstNI	CCWGG	2 cut(s)	5, 197
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	3, 195
BstV1I	GCAGC	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	347
BsuTUI	ATCGAT	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	428
ClaI	ATCGAT	1 cut(s)	290
CviAII	CATG	3 cut(s)	55, 316, 385
CviJI	RGCY	7 cut(s)	118, 205, 238, 243, 279, 430, 530
CviKI_1	RGCY	7 cut(s)	118, 205, 238, 243, 279, 430, 530
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	9, 77, 461
DpnII	GATC	3 cut(s)	7, 75, 459
DraI	TTTAAA	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	3, 195
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	58, 319, 388
FatI	CATG	3 cut(s)	54, 315, 384
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	2 cut(s)	328, 531
GluI	GCNGC	1 cut(s)	382
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	58, 319, 388
HinfI	GANTC	2 cut(s)	190, 259
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	131, 455
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	93, 390, 479
Hpy8I	GTNNAC	2 cut(s)	131, 455
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	38, 219, 412, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 448
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	58, 319, 388
Kzo9I	GATC	3 cut(s)	7, 75, 459
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	9 cut(s)	17, 33, 159, 182, 209, 229, 375, 412, 448
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	25, 399
MaeI	CTAG	2 cut(s)	328, 531
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	9, 77, 461
MboI	GATC	3 cut(s)	7, 75, 459
MboII	GAAGA	2 cut(s)	92, 112
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	3 cut(s)	25, 281, 304
MnlI	CCTC	5 cut(s)	142, 195, 247, 350, 355
MseI	TTAA	4 cut(s)	17, 101, 490, 500
MspCI	CTTAAG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	5, 197
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	5, 197
MwoI	GCNNNNNNNGC	2 cut(s)	432, 448
NdeII	GATC	3 cut(s)	7, 75, 459
NlaIII	CATG	3 cut(s)	58, 319, 388
NmeAIII	GCCGAG	1 cut(s)	219
NspI	RCATGY	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	190, 259
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	3, 195
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	2 cut(s)	3, 195
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	17, 101, 490, 500
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	3 cut(s)	7, 75, 459
ScrFI	CCNGG	2 cut(s)	5, 197
SetI	ASST	8 cut(s)	46, 52, 100, 120, 153, 240, 467, 532
SfaNI	GCATC	2 cut(s)	25, 399
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	25, 281, 304
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	328, 531
StyD4I	CCNGG	2 cut(s)	3, 195
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	78, 92, 290
TasI	AATT	3 cut(s)	25, 281, 304
TfiI	GAWTC	2 cut(s)	190, 259
Tru1I	TTAA	4 cut(s)	17, 101, 490, 500
Tru9I	TTAA	4 cut(s)	17, 101, 490, 500
TseI	GCWGC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	2 cut(s)	328, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.