Rmu_sc0000334.1_g000020

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000334.1
Physical Location & Seq
Forward (+)
82820 .. 89420
6601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000334.1_g000020.1.cds

Sequence Viewer

Length: 1080 bp
ctggtcttcgacctttcttcttcttcttcttctgctgcgtttaattctgcaattcaggcctcggtgacccagacggtgttcgatcaaaagccggtggccattttcggagtttccaaggttttgttgcccaaagagatttttgggagcaccctggcatccaggcccgggacgccagtttccggttgggctgagacgccggacagtgctccgtcaccggacaattcgatgagtgggcaggaactctcttcgccgcccggttttaaggagataaaatccgagggtgctgccattactaggctgtgcaggaggtccaagtcagattggtccagaacagtcgagggagagagcttagagctctctgaccgaaacagcaacctgccacctgaagaagcgacccggccggcgctccaccgtccggccactccacgactgcgggagggaacccacgaatttgtctctgcttcgcttacgtctctgtgtccttggatcatccatgcactgaacagagaagaaaacccgaagacgagaagtccgaaccttcaccggaaacctctgcaatatccggctcctccggccaccgtctgggtcgtctgtggtataaaacctcttctcttggtcatgctcttcatgctaagtagggtagcccaaaaggagaagcccgacagcacaaggcccagcaggatttggaaccggcccaaaacttcacctcctcgtgcgtccttgcaacgccgactgcttccaccacctgtctgccataccttgccgctcctaccaccctcaacaagccgcgccgacccgactcagcataccacggccattgctcagcctcgccgcgtactccaccagaatcacaagctgctcggatccttcatatcctcaccgcctcacagttcctcaaaaccacaacgctgctcaacctatcagaaaccgtgccaccgcctgattctgcagagcccacgccggagtcccatccctgcacaacgcgaagcgaacacacctagggacttcgtctggaaaccatcctaccctgtccaacaccttgagcccaactcctcacttttgaacttcccgagcaaatag

Protein Analysis

359

Amino Acids

39.71

Weight (kDa)

10.25

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025479)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 582
AccBSI CCGCTC 1 cut(s) 766
AccII CGCG 3 cut(s) 789, 834, 984
AciI CCGC 7 cut(s) 251, 433, 764, 787, 832, 881, 937
AclWI GGATC 3 cut(s) 494, 858, 871
AcoI YGGCCR 5 cut(s) 96, 398, 417, 573, 813
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 2 cut(s) 170, 194
AfaI GTAC 1 cut(s) 837
AfiI CCNNNNNNNGG 5 cut(s) 165, 179, 294, 415, 582
AgsI TTSAA 1 cut(s) 1063
AhdI GACNNNNNGTC 1 cut(s) 528
AjnI CCWGG 2 cut(s) 150, 158
AluBI AGCT 3 cut(s) 348, 355, 856
AluI AGCT 3 cut(s) 348, 355, 856
Alw21I GWGCWC 3 cut(s) 149, 208, 357
Alw26I GTCTC 3 cut(s) 185, 460, 477
AlwI GGATC 3 cut(s) 494, 858, 871
Ama87I CYCGRG 2 cut(s) 164, 1069
AoxI GGCC 9 cut(s) 57, 96, 161, 398, 417, 573, 671, 692, 813
ApeKI GCWGC 4 cut(s) 35, 284, 856, 909
ApoI RAATTY 1 cut(s) 449
AspA2I CCTAGG 1 cut(s) 998
AspLEI GCGC 2 cut(s) 406, 791
AspS9I GGNCC 5 cut(s) 162, 309, 324, 672, 693
AsuC2I CCSGG 4 cut(s) 165, 166, 255, 397
AsuHPI GGTGA 5 cut(s) 76, 204, 533, 696, 870
AvaI CYCGRG 2 cut(s) 164, 1069
AvaII GGWCC 2 cut(s) 309, 324
AvrII CCTAGG 1 cut(s) 998
BalI TGGCCA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 863
BanII GRGCYC 3 cut(s) 357, 956, 1047
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 3 cut(s) 149, 208, 357
BbvI GCAGC 4 cut(s) 22, 271, 843, 896
BccI CCATC 2 cut(s) 977, 1027
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 152, 160
BcnI CCSGG 4 cut(s) 165, 166, 255, 397
BcoDI GTCTC 3 cut(s) 185, 460, 477
BfaI CTAG 2 cut(s) 294, 999
BfmI CTRYAG 1 cut(s) 947
BfoI RGCGCY 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 384
BisI GCNGC 8 cut(s) 36, 251, 285, 764, 787, 832, 857, 910
BlnI CCTAGG 1 cut(s) 998
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 8 cut(s) 37, 252, 286, 765, 788, 833, 858, 911
Bme1390I CCNGG 6 cut(s) 152, 160, 165, 166, 255, 397
Bme18I GGWCC 2 cut(s) 309, 324
BmeRI GACNNNNNGTC 1 cut(s) 528
BmeT110I CYCGRG 2 cut(s) 164, 1069
BmgT120I GGNCC 5 cut(s) 162, 309, 324, 672, 693
BmiI GGNNCC 4 cut(s) 442, 567, 689, 865
BmrFI CCNGG 6 cut(s) 152, 160, 165, 166, 255, 397
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 527
BplI GAGNNNNNCTC 2 cut(s) 1034, 1066
Bpu1102I GCTNAGC 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 1061
BpuMI CCSGG 4 cut(s) 165, 166, 255, 397
BsaHI GRCGYC 2 cut(s) 170, 194
BsaJI CCNNGG 8 cut(s) 60, 114, 150, 164, 276, 482, 810, 998
BsaWI WCCGGW 3 cut(s) 179, 214, 543
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 179, 294, 415, 582
Bse118I RCCGGY 3 cut(s) 91, 400, 690
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 2 cut(s) 152, 160
BseDI CCNNGG 8 cut(s) 60, 114, 150, 164, 276, 482, 810, 998
BseGI GGATG 4 cut(s) 155, 489, 969, 1019
BseLI CCNNNNNNNGG 5 cut(s) 165, 179, 294, 415, 582
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 3 cut(s) 180, 815, 836
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 3 cut(s) 558, 699, 1042
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 4 cut(s) 22, 271, 843, 896
BseYI CCCAGC 1 cut(s) 674
BsgI GTGCAG 2 cut(s) 322, 960
Bsh1236I CGCG 3 cut(s) 789, 834, 984
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 9 cut(s) 59, 98, 163, 400, 419, 575, 673, 694, 815
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 3 cut(s) 149, 208, 357
BsiHKCI CYCGRG 2 cut(s) 164, 1069
BslFI GGGAC 3 cut(s) 181, 951, 1016
BslI CCNNNNNNNGG 5 cut(s) 165, 179, 294, 415, 582
BsmAI GTCTC 3 cut(s) 185, 460, 477
BsmBI CGTCTC 2 cut(s) 185, 477
BsmFI GGGAC 3 cut(s) 181, 951, 1016
BsnI GGCC 9 cut(s) 59, 98, 163, 400, 419, 575, 673, 694, 815
BsoBI CYCGRG 2 cut(s) 164, 1069
Bsp1286I GDGCHC 5 cut(s) 149, 208, 357, 956, 1047
Bsp143I GATC 3 cut(s) 82, 486, 863
Bsp1720I GCTNAGC 1 cut(s) 822
BspACI CCGC 7 cut(s) 251, 433, 764, 787, 832, 881, 937
BspANI GGCC 9 cut(s) 59, 98, 163, 400, 419, 575, 673, 694, 815
BspCNI CTCAG 3 cut(s) 181, 814, 835
BspFNI CGCG 3 cut(s) 789, 834, 984
BspLI GGNNCC 4 cut(s) 442, 567, 689, 865
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 3 cut(s) 494, 858, 871
BspQI GCTCTTC 1 cut(s) 629
BsrBI CCGCTC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 816
BsrFI RCCGGY 3 cut(s) 91, 400, 690
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 3 cut(s) 91, 400, 690
BssECI CCNNGG 8 cut(s) 60, 114, 150, 164, 276, 482, 810, 998
BssMI GATC 3 cut(s) 82, 486, 863
BssNI GRCGYC 2 cut(s) 170, 194
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 3 cut(s) 114, 482, 998
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 152, 160
Bst4CI ACNGT 7 cut(s) 76, 203, 334, 413, 580, 890, 930
Bst6I CTCTTC 3 cut(s) 250, 612, 629
BstACI GRCGYC 2 cut(s) 170, 194
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 5 cut(s) 189, 349, 632, 801, 822
BstDSI CCRYGG 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 4 cut(s) 155, 489, 969, 1019
BstFNI CGCG 3 cut(s) 789, 834, 984
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 2 cut(s) 406, 791
BstKTI GATC 3 cut(s) 85, 489, 866
BstMAI GTCTC 3 cut(s) 185, 460, 477
BstMBI GATC 3 cut(s) 82, 486, 863
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 4 cut(s) 56, 169, 572, 628
BstNI CCWGG 2 cut(s) 152, 160
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 6 cut(s) 150, 158, 163, 164, 253, 395
BstSFI CTRYAG 1 cut(s) 947
BstUI CGCG 3 cut(s) 789, 834, 984
BstV1I GCAGC 4 cut(s) 22, 271, 843, 896
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
BstZI CGGCCG 1 cut(s) 398
BsuRI GGCC 9 cut(s) 59, 98, 163, 400, 419, 575, 673, 694, 815
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 4 cut(s) 155, 489, 969, 1019
BtsIMutI CAGTG 2 cut(s) 208, 497
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 2 cut(s) 406, 791
Cfr10I RCCGGY 3 cut(s) 91, 400, 690
Cfr13I GGNCC 5 cut(s) 162, 309, 324, 672, 693
Cfr9I CCCGGG 1 cut(s) 164
CseI GACGC 3 cut(s) 178, 202, 705
Csp6I GTAC 1 cut(s) 836
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 3 cut(s) 494, 619, 628
CviQI GTAC 1 cut(s) 836
DdeI CTNAG 5 cut(s) 189, 349, 632, 801, 822
DpnI GATC 3 cut(s) 84, 488, 865
DpnII GATC 3 cut(s) 82, 486, 863
DriI GACNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 5 cut(s) 96, 398, 417, 573, 813
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 3 cut(s) 250, 612, 629
Eam1105I GACNNNNNGTC 1 cut(s) 528
EarI CTCTTC 3 cut(s) 250, 612, 629
Ecl136II GAGCTC 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 3 cut(s) 114, 482, 998
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 3 cut(s) 357, 956, 1047
Eco47I GGWCC 2 cut(s) 309, 324
Eco52I CGGCCG 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 405
Eco88I CYCGRG 2 cut(s) 164, 1069
Eco91I GGTNACC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 150, 158
EcoT14I CCWWGG 3 cut(s) 114, 482, 998
EcoT38I GRGCYC 3 cut(s) 357, 956, 1047
ErhI CCWWGG 3 cut(s) 114, 482, 998
Esp3I CGTCTC 2 cut(s) 185, 477
FaeI CATG 3 cut(s) 497, 622, 631
FaiI YATR 7 cut(s) 495, 599, 620, 629, 756, 807, 872
FaqI GGGAC 3 cut(s) 181, 951, 1016
FatI CATG 3 cut(s) 493, 618, 627
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 8 cut(s) 36, 251, 285, 764, 787, 832, 857, 910
FokI GGATG 4 cut(s) 142, 476, 956, 1006
FriOI GRGCYC 3 cut(s) 357, 956, 1047
Fsp4HI GCNGC 8 cut(s) 36, 251, 285, 764, 787, 832, 857, 910
FspBI CTAG 2 cut(s) 294, 999
GlaI GCGC 2 cut(s) 405, 790
GluI GCNGC 8 cut(s) 36, 251, 285, 764, 787, 832, 857, 910
GsaI CCCAGC 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 9 cut(s) 59, 98, 163, 400, 419, 575, 673, 694, 815
HgaI GACGC 3 cut(s) 178, 202, 705
HhaI GCGC 2 cut(s) 406, 791
Hin1I GRCGYC 2 cut(s) 170, 194
Hin1II CATG 3 cut(s) 497, 622, 631
Hin6I GCGC 2 cut(s) 404, 789
HinP1I GCGC 2 cut(s) 404, 789
HinfI GANTC 4 cut(s) 799, 847, 943, 964
HphI GGTGA 5 cut(s) 76, 204, 533, 696, 870
Hpy188I TCNGA 7 cut(s) 107, 277, 319, 361, 534, 863, 924
Hpy188III TCNNGA 3 cut(s) 327, 1012, 1069
HpyAV CCTTC 2 cut(s) 548, 877
HpyCH4III ACNGT 7 cut(s) 76, 203, 334, 413, 580, 890, 930
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 7 cut(s) 50, 303, 497, 556, 724, 949, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 169, 572, 628
HpyF3I CTNAG 5 cut(s) 189, 349, 632, 801, 822
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 2 cut(s) 170, 194
Hsp92II CATG 3 cut(s) 497, 622, 631
HspAI GCGC 2 cut(s) 404, 789
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 82, 486, 863
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 5 cut(s) 144, 211, 411, 571, 771
Lsp1109I GCAGC 4 cut(s) 22, 271, 843, 896
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 294, 999
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 64, 210
MalI GATC 3 cut(s) 84, 488, 865
MbiI CCGCTC 1 cut(s) 766
MboI GATC 3 cut(s) 82, 486, 863
MflI RGATCY 1 cut(s) 863
MhlI GDGCHC 5 cut(s) 149, 208, 357, 956, 1047
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 4 cut(s) 43, 51, 220, 449
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 2 cut(s) 793, 973
MmeI TCCRAC 1 cut(s) 1057
Mox20I TGGCCA 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 400
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 42, 261
Msp20I TGGCCA 1 cut(s) 98
MspR9I CCNGG 6 cut(s) 152, 160, 165, 166, 255, 397
MvaI CCWGG 2 cut(s) 152, 160
MvnI CGCG 3 cut(s) 789, 834, 984
MwoI GCNNNNNNNGC 4 cut(s) 56, 169, 572, 628
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 4 cut(s) 165, 166, 255, 397
NdeII GATC 3 cut(s) 82, 486, 863
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 497, 622, 631
NlaIV GGNNCC 4 cut(s) 442, 567, 689, 865
NmuCI GTSAC 2 cut(s) 64, 210
PceI AGGCCT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 847, 943
PflFI GACNNNGTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 582
PkrI GCNGC 8 cut(s) 37, 252, 286, 765, 788, 833, 858, 911
PleI GAGTC 2 cut(s) 793, 972
PpsI GAGTC 2 cut(s) 793, 972
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 150, 158
PspEI GGTNACC 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 2 cut(s) 150, 158
PspN4I GGNNCC 4 cut(s) 442, 567, 689, 865
PspPI GGNCC 5 cut(s) 162, 309, 324, 672, 693
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 863
PsyI GACNNNGTC 1 cut(s) 1007
RsaI GTAC 1 cut(s) 837
RsaNI GTAC 1 cut(s) 836
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 629
SaqAI TTAA 2 cut(s) 42, 261
SatI GCNGC 8 cut(s) 36, 251, 285, 764, 787, 832, 857, 910
Sau3AI GATC 3 cut(s) 82, 486, 863
Sau96I GGNCC 5 cut(s) 162, 309, 324, 672, 693
SchI GAGTC 2 cut(s) 793, 973
ScrFI CCNGG 6 cut(s) 152, 160, 165, 166, 255, 397
SduI GDGCHC 5 cut(s) 149, 208, 357, 956, 1047
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 947
SinI GGWCC 2 cut(s) 309, 324
SmaI CCCGGG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
Sse9I AATT 4 cut(s) 43, 51, 220, 449
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 7 cut(s) 251, 433, 764, 787, 832, 881, 937
SspMI CTAG 2 cut(s) 294, 999
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 6 cut(s) 150, 158, 163, 164, 253, 395
StyI CCWWGG 3 cut(s) 114, 482, 998
TaaI ACNGT 7 cut(s) 76, 203, 334, 413, 580, 890, 930
TaiI ACGT 1 cut(s) 473
TaqI TCGA 4 cut(s) 9, 81, 224, 336
TaqII GACCGA 1 cut(s) 378
TasI AATT 4 cut(s) 43, 51, 220, 449
TauI GCSGC 4 cut(s) 253, 766, 789, 834
TfiI GAWTC 2 cut(s) 847, 943
Tru1I TTAA 2 cut(s) 42, 261
Tru9I TTAA 2 cut(s) 42, 261
TscAI CASTG 2 cut(s) 208, 504
TseFI GTSAC 2 cut(s) 64, 210
TseI GCWGC 4 cut(s) 35, 284, 856, 909
Tsp45I GTSAC 2 cut(s) 64, 210
TspDTI ATGAA 2 cut(s) 616, 859
TspGWI ACGGA 1 cut(s) 198
TspMI CCCGGG 1 cut(s) 164
TspRI CASTG 2 cut(s) 208, 504
Tth111I GACNNNGTC 1 cut(s) 1007
Van91I CCANNNNNTGG 1 cut(s) 582
VpaK11BI GGWCC 2 cut(s) 309, 324
XapI RAATTY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XmaI CCCGGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 998
XspI CTAG 2 cut(s) 294, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.