Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016872.1

Orthogroup ID

OG0025479

Physical Location & Seq

Genomic Coordinates Reverse (-)

13774 .. 14184

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016872.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctggtcttcgacctttcttcttcttcttcttcttctgctgcgtttaattctgcaattcaggcctcggtgacccagacggtgttcgatcaaaagccggtggccattttcggagtttccaaggttttgttgcccaaagagatttttgggagcaccctggcatccaggcccgggacgccagtttccggttggcctgagacgccggacagtgctccctcaccggacaattcgatgagtgggcaggaactctcttcgccgcccggttttaaggagataaaatccgagggtgctgccattactaggctgtggaggttgggggttgcttcatgttgtatagcattgtataaaacccaaaatgcaggaaattgcgcagattttctgggaatagagctagagaaggaaattgggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

136

Amino Acids

14.21

Weight (kDa)

4.85

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025479)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000334.1_g000020 Rmu_sc0000429.1_g000053 Rmu_sc0016872.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	409
Acc16I	TGCGCA	1 cut(s)	367
AciI	CCGC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	173, 197
AfiI	CCNNNNNNNGG	3 cut(s)	168, 182, 297
AjnI	CCWGG	2 cut(s)	153, 161
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	2 cut(s)	152, 211
Alw26I	GTCTC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	4 cut(s)	60, 99, 164, 188
ApeKI	GCWGC	2 cut(s)	38, 287
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	3 cut(s)	168, 169, 258
AsuHPI	GGTGA	2 cut(s)	79, 207
AvaI	CYCGRG	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	152, 211
BbvI	GCAGC	2 cut(s)	25, 274
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	155, 163
BcnI	CCSGG	3 cut(s)	168, 169, 258
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	297, 389
BisI	GCNGC	3 cut(s)	39, 254, 288
BlsI	GCNGC	3 cut(s)	40, 255, 289
Bme1390I	CCNGG	5 cut(s)	155, 163, 168, 169, 258
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	165
BmrFI	CCNGG	5 cut(s)	155, 163, 168, 169, 258
BmsI	GCATC	1 cut(s)	167
BpuMI	CCSGG	3 cut(s)	168, 169, 258
BsaHI	GRCGYC	2 cut(s)	173, 197
BsaJI	CCNNGG	5 cut(s)	63, 117, 153, 167, 279
BsaWI	WCCGGW	2 cut(s)	182, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 182, 297
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	155, 163
BseDI	CCNNGG	5 cut(s)	63, 117, 153, 167, 279
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	3 cut(s)	168, 182, 297
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	25, 274
BshFI	GGCC	4 cut(s)	62, 101, 166, 190
BsiHKAI	GWGCWC	2 cut(s)	152, 211
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	6 cut(s)	95, 168, 183, 200, 218, 258
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	168, 182, 297
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	4 cut(s)	62, 101, 166, 190
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	152, 211
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	4 cut(s)	62, 101, 166, 190
BspCNI	CTCAG	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	5 cut(s)	63, 117, 153, 167, 279
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	2 cut(s)	173, 197
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	155, 163
Bst4CI	ACNGT	2 cut(s)	79, 206
Bst6I	CTCTTC	1 cut(s)	253
BstACI	GRCGYC	2 cut(s)	173, 197
BstDEI	CTNAG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 172, 196
BstNI	CCWGG	2 cut(s)	155, 163
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	5 cut(s)	153, 161, 166, 167, 256
BstV1I	GCAGC	2 cut(s)	25, 274
BsuRI	GGCC	4 cut(s)	62, 101, 166, 190
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	165
Cfr9I	CCCGGG	1 cut(s)	167
CseI	GACGC	2 cut(s)	181, 205
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	7 cut(s)	62, 94, 101, 166, 190, 301, 388
CviKI_1	RGCY	7 cut(s)	62, 94, 101, 166, 190, 301, 388
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	153, 161
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	327
FaiI	YATR	4 cut(s)	325, 332, 342, 409
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	323
Fnu4HI	GCNGC	3 cut(s)	39, 254, 288
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	39, 254, 288
FspBI	CTAG	2 cut(s)	297, 389
FspI	TGCGCA	1 cut(s)	367
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	3 cut(s)	39, 254, 288
HaeIII	GGCC	4 cut(s)	62, 101, 166, 190
HapII	CCGG	6 cut(s)	95, 168, 183, 200, 218, 258
HgaI	GACGC	2 cut(s)	181, 205
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	173, 197
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HpaII	CCGG	6 cut(s)	95, 168, 183, 200, 218, 258
HphI	GGTGA	2 cut(s)	79, 207
Hpy188I	TCNGA	2 cut(s)	110, 280
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	79, 206
HpyCH4V	TGCA	2 cut(s)	53, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 172, 196
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	173, 197
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	147, 214
Lsp1109I	GCAGC	2 cut(s)	25, 274
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	297, 389
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	7 cut(s)	9, 12, 15, 18, 21, 24, 240
MhlI	GDGCHC	2 cut(s)	152, 211
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	5 cut(s)	46, 54, 223, 361, 399
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	4 cut(s)	73, 223, 274, 300
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	2 cut(s)	45, 264
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	6 cut(s)	95, 168, 183, 200, 218, 258
MspR9I	CCNGG	5 cut(s)	155, 163, 168, 169, 258
MvaI	CCWGG	2 cut(s)	155, 163
MwoI	GCNNNNNNNGC	3 cut(s)	59, 172, 196
NciI	CCSGG	3 cut(s)	168, 169, 258
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	67
NsbI	TGCGCA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	40, 255, 289
PsiI	TTATAA	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	153, 161
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	153, 161
PspPI	GGNCC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	45, 264
SatI	GCNGC	3 cut(s)	39, 254, 288
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	165
ScrFI	CCNGG	5 cut(s)	155, 163, 168, 169, 258
SduI	GDGCHC	2 cut(s)	152, 211
SetI	ASST	4 cut(s)	15, 123, 311, 390
SfaNI	GCATC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	169
Sse9I	AATT	5 cut(s)	46, 54, 223, 361, 399
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	297, 389
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	5 cut(s)	153, 161, 166, 167, 256
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	79, 206
TaqI	TCGA	3 cut(s)	9, 84, 227
TasI	AATT	5 cut(s)	46, 54, 223, 361, 399
TauI	GCSGC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	45, 264
Tru9I	TTAA	2 cut(s)	45, 264
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	38, 287
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	312
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	297, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.