Rmu_sc0000366.1_g000001

Importin-beta N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000366.1
OG0023039
Physical Location & Seq
Forward (+)
457 .. 759
303 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
atggcaaaggaggacttgcagtatggatgtgtcgctctaacagcgatcgggtctatagttggcatttatctgaaataccatcctagtgaaacagagggttttgcaaccgaattcagggattatattgatgttctgcttaaatggctgaatgatggcagcccagatgtgaggtggaatgccacagacactttgtttcggatgttgcagtctcttcacaatccaaaatatggtttttttgtcataactccagctaaccttctaaatgttctagatgctctaataaaaagaatggatgatggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

100

Amino Acids

11.34

Weight (kDa)

4.91

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023039)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000366.1_g000001 Rmu_sc0025281.1_g000001
rosa_roxburghii Rroxscaffold_1G00023760
rosa_samantha Rh5DG429300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 227
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 114, 227
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 110
BbvI GCAGC 1 cut(s) 168
BccI CCATC 3 cut(s) 87, 146, 290
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 2 cut(s) 84, 269
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 227
BseGI GGATG 4 cut(s) 32, 79, 204, 298
BseLI CCNNNNNNNGG 2 cut(s) 114, 227
BseXI GCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 114, 227
BsmAI GTCTC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 45
BssMI GATC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 216
BstF5I GGATG 4 cut(s) 32, 79, 204, 298
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 41, 142
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 168
BtsCI GGATG 4 cut(s) 32, 79, 204, 298
CviJI RGCY 3 cut(s) 145, 159, 251
CviKI_1 RGCY 3 cut(s) 145, 159, 251
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 110
FaiI YATR 5 cut(s) 24, 56, 123, 228, 242
FalI AAGNNNNNCTT 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 3 cut(s) 39, 66, 211
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 84, 269
GluI GCNGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 72, 198
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 19, 104, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 142
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 100, 174, 261
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 84, 269
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 203
MluCI AATT 1 cut(s) 110
MnlI CCTC 3 cut(s) 4, 88, 162
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 41, 142
NdeII GATC 1 cut(s) 45
PctI GAATGC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 1 cut(s) 158
Ple19I CGATCG 1 cut(s) 48
PvuI CGATCG 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 45
SetI ASST 3 cut(s) 173, 253, 258
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 54
SgeI CNNG 7 cut(s) 28, 61, 96, 127, 173, 260, 281
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 1 cut(s) 110
SspMI CTAG 2 cut(s) 84, 269
TasI AATT 1 cut(s) 110
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XspI CTAG 2 cut(s) 84, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.