Rh5DG429300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
68577864 .. 68588942
11079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG429300.1

Sequence Viewer

Length: 186 bp
ATGGCGATGAGAAAATTCAGAACAATTGTGCGGACCATAGGCCCAGCTCCTGTTCTCCAAGTCCCTCTTCAATTGGAGTATATGGTAACTAGTATAAGGGGGGCATCTATACGTAATTCACACCCCATTTTGTCCAGGCACTGGTGGTACAAGCATTTACAGTGGAATAGTTTCCCGTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.29

Weight (kDa)

11.72

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023039)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000366.1_g000001 Rmu_sc0025281.1_g000001
rosa_roxburghii Rroxscaffold_1G00023760
rosa_samantha Rh5DG429300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
AlwNI CAGNNNCTG 2 cut(s) 50, 141
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 33, 41
AvaII GGWCC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 33, 41
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 42
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 42
BspACI CCGC 1 cut(s) 31
BspANI GGCC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 176
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSNI TACGTA 1 cut(s) 113
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 139, 167
CaiI CAGNNNCTG 2 cut(s) 50, 141
Cfr13I GGNCC 2 cut(s) 33, 41
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 2 cut(s) 42, 47
CviKI_1 RGCY 2 cut(s) 42, 47
CviQI GTAC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco105I TACGTA 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 134
FaiI YATR 5 cut(s) 38, 81, 83, 95, 110
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 47
FspBI CTAG 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 112
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 57, 63, 121, 127, 148
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 1 cut(s) 59
MfeI CAATTG 2 cut(s) 24, 71
MluCI AATT 4 cut(s) 14, 24, 71, 115
MnlI CCTC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 136
MunI CAATTG 2 cut(s) 24, 71
MvaI CCWGG 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 134
PspPI GGNCC 2 cut(s) 33, 41
PstNI CAGNNNCTG 2 cut(s) 50, 141
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 33, 41
ScrFI CCNGG 1 cut(s) 136
SetI ASST 2 cut(s) 49, 115
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 8 cut(s) 56, 62, 71, 102, 147, 148, 154, 163
SinI GGWCC 1 cut(s) 33
SnaBI TACGTA 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 4 cut(s) 14, 24, 71, 115
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 115
TasI AATT 4 cut(s) 14, 24, 71, 115
TscAI CASTG 2 cut(s) 146, 167
TspRI CASTG 2 cut(s) 146, 167
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.