Rroxscaffold_1G00023760

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
29356680 .. 29369021
12342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023760.1

Sequence Viewer

Length: 366 bp
ATGGCGATGAGAAACTTCAGAACAATTGTGCGGACCATAGGCCCAGCTCCTGTTCTCCAAGTCCCTCTTCAATTGGAGTATGACTTGAAGTATGGATGTGTCGCTCTAACAGCGATCGGGTCTATAGTTGGCATCTGTCCGAAATACCATCCTAGTGAAACAAAGGGTTTTGCAACCAAATTCAGGGATTATATTGATGTTCTGCTTGAATGGCTGGATAATGGCAGCCCGATTGCTATTGGGCGACCACGCAAACGAGTTCCAACATCTAGCCGTAGCTCGCAACATCGTCCTAGACTACAAGCTAGGAGCGCAAAGACAGTTATATCATCCTCTTCAGCAACATTCTCACTAGCTATTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.34

Weight (kDa)

10.34

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023039)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000366.1_g000001 Rmu_sc0025281.1_g000001
rosa_roxburghii Rroxscaffold_1G00023760
rosa_samantha Rh5DG429300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 3 cut(s) 71, 88, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 4 cut(s) 47, 279, 305, 356
AluI AGCT 4 cut(s) 47, 279, 305, 356
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 33, 41
AvaII GGWCC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 258
BfaI CTAG 5 cut(s) 153, 270, 294, 306, 353
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 33, 41
BmsI GCATC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 101, 148, 329
BseLI CCNNNNNNNGG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 1 cut(s) 31
BspANI GGCC 1 cut(s) 42
BssMI GATC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 72, 340
BstC8I GCNNGC 1 cut(s) 281
BstF5I GGATG 3 cut(s) 101, 148, 329
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 110, 211, 311
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 101, 148, 329
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 50
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 33, 41
CviJI RGCY 8 cut(s) 42, 47, 214, 228, 273, 279, 305, 356
CviKI_1 RGCY 8 cut(s) 42, 47, 214, 228, 273, 279, 305, 356
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 72, 340
EarI CTCTTC 2 cut(s) 72, 340
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 321
FaiI YATR 7 cut(s) 38, 81, 93, 125, 192, 326, 364
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 3 cut(s) 108, 135, 316
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 5 cut(s) 153, 270, 294, 306, 353
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 42
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 20, 141
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 211, 311
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 52, 309
LpnPI CCDG 4 cut(s) 57, 63, 169, 200
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 141
MaeI CTAG 5 cut(s) 153, 270, 294, 306, 353
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 59, 327
MfeI CAATTG 2 cut(s) 24, 71
MluCI AATT 3 cut(s) 24, 71, 179
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 2 cut(s) 75, 343
MslI CAYNNNNRTG 1 cut(s) 153
MunI CAATTG 2 cut(s) 24, 71
MwoI GCNNNNNNNGC 3 cut(s) 110, 211, 311
NdeII GATC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 227
Ple19I CGATCG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 33, 41
PstNI CAGNNNCTG 1 cut(s) 50
PvuI CGATCG 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 153
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 2 cut(s) 33, 41
SetI ASST 4 cut(s) 49, 281, 307, 358
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 3 cut(s) 24, 71, 179
SsiI CCGC 1 cut(s) 31
SspMI CTAG 5 cut(s) 153, 270, 294, 306, 353
TaaI ACNGT 1 cut(s) 322
TasI AATT 3 cut(s) 24, 71, 179
TseI GCWGC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 179
XspI CTAG 5 cut(s) 153, 270, 294, 306, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.