Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000366.1

Orthogroup ID

OG0031066

Physical Location & Seq

Genomic Coordinates Forward (+)

183843 .. 185004

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000366.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggcaatcttgctctcttcctctgcttctgcttcaatcttcacatcttcaccatcccaatccctcaagccactgaacccatctctccctttcttgatctccaccgctaacccacatcgaaaaccttcaggaagagcaaagagtctttttcctttaagagtagcaacccaacctcagaccacagacccagatcgacccaccaaaacagagcaagatggggaaagttacaatcttggagatgaggttgaggatgaaagctcagcaaccaagttcaattggagagatcactggtacccagtttctttgattgaagatttggaccctaaattgcctaccccatttcagcttctgggtcgagacatagttttgtggttcgataggaacaaacaggaatgggtggctttagatgacaaatgccctcaccgcctcgcgccattatctgaagggaggattgatgaaggtggaaacttgcagtgttcataccatgggtggtcatttgatgggtgtggatcctgtgttaagattccacaggcttcacctcaaggtcctgaagctcgtgcagtcaggtctccaagagcatgtgccactaggtttcctactcaggtgtctcaaggcctgctctttgtctggcctgatgagaatggttgggaaagagccaatgcctccaagcctccaatgctacctgatgagtttggcaaacctgagttttcgacggtgacaattcagcgtgatctcttctatggctatgataccctcatggaaaatgtgtctgatccttcccacattgactttgctcatcacaatgtatatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009706 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016730 GO:0019439 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032441 GO:0032501 GO:0032502 GO:0033013 GO:0033015 GO:0034641 GO:0042170 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046149 GO:0046483 GO:0046700 GO:0048037 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051536 GO:0051540 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0090567 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

271

Amino Acids

30.33

Weight (kDa)

5.18

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031066)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000366.1_g000046
rosa_samantha	Rh5AG371200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	105, 424
AclWI	GGATC	3 cut(s)	504, 517, 767
AcuI	CTGAAG	3 cut(s)	111, 462, 570
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	36, 274, 311
AluBI	AGCT	3 cut(s)	258, 346, 554
AluI	AGCT	3 cut(s)	258, 346, 554
Alw26I	GTCTC	3 cut(s)	351, 573, 612
AlwI	GGATC	3 cut(s)	504, 517, 767
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	2 cut(s)	613, 629
Asp700I	GAANNNNTTC	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	319, 545
AsuHPI	GGTGA	4 cut(s)	42, 413, 528, 727
AvaII	GGWCC	2 cut(s)	319, 545
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	555
BccI	CCATC	4 cut(s)	61, 88, 209, 494
BcoDI	GTCTC	3 cut(s)	351, 573, 612
BfaI	CTAG	1 cut(s)	588
BlpI	GCTNAGC	1 cut(s)	259
Bme18I	GGWCC	2 cut(s)	319, 545
BmgT120I	GGNCC	2 cut(s)	319, 545
BmiI	GGNNCC	3 cut(s)	293, 321, 511
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	3 cut(s)	50, 525, 594
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	2 cut(s)	293, 296
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	53, 256
BseMII	CTCAG	4 cut(s)	188, 273, 614, 693
BseNI	ACTGG	2 cut(s)	293, 296
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	615, 631
BshNI	GGYRCC	1 cut(s)	291
BsmAI	GTCTC	3 cut(s)	351, 573, 612
BsnI	GGCC	2 cut(s)	615, 631
Bso31I	GGTCTC	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
Bsp1720I	GCTNAGC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	2 cut(s)	105, 424
BspANI	GGCC	2 cut(s)	615, 631
BspCNI	CTCAG	4 cut(s)	187, 272, 613, 694
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	293, 321, 511
BspPI	GGATC	3 cut(s)	504, 517, 767
BspQI	GCTCTTC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	293, 296
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	3 cut(s)	22, 127, 740
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	4 cut(s)	174, 259, 600, 702
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	53, 256
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	6 cut(s)	99, 193, 286, 512, 733, 775
BstMAI	GTCTC	3 cut(s)	351, 573, 612
BstMBI	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 676
BstNSI	RCATGY	1 cut(s)	582
BstUI	CGCG	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	615, 631
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	53, 256
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	71, 286, 479
Cac8I	GCNNGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	319, 545
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	485, 579, 757
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	174, 259, 600, 702
DpnI	GATC	6 cut(s)	98, 192, 285, 511, 732, 774
DpnII	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
Eam1104I	CTCTTC	3 cut(s)	22, 127, 740
EarI	CTCTTC	3 cut(s)	22, 127, 740
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	319, 545
Eco57I	CTGAAG	3 cut(s)	111, 462, 570
EcoO109I	RGGNCCY	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	3 cut(s)	488, 582, 760
FaiI	YATR	9 cut(s)	362, 481, 486, 580, 741, 747, 758, 808, 810
FatI	CATG	3 cut(s)	484, 578, 756
FokI	GGATG	2 cut(s)	40, 263
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	615, 631
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	488, 582, 760
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HinfI	GANTC	2 cut(s)	142, 523
HphI	GGTGA	4 cut(s)	42, 413, 528, 727
Hpy188I	TCNGA	3 cut(s)	177, 442, 772
Hpy188III	TCNNGA	4 cut(s)	94, 129, 356, 548
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	4 cut(s)	135, 437, 452, 786
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4V	TGCA	2 cut(s)	472, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 676
HpyF3I	CTNAG	4 cut(s)	174, 259, 600, 702
Hsp92II	CATG	3 cut(s)	488, 582, 760
HspAI	GCGC	1 cut(s)	431
KpnI	GGTACC	1 cut(s)	295
Kzo9I	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
LguI	GCTCTTC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	224, 715
MalI	GATC	6 cut(s)	98, 192, 285, 511, 732, 774
MboI	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
MboII	GAAGA	6 cut(s)	9, 31, 39, 144, 323, 727
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	3 cut(s)	274, 326, 720
MlyI	GAGTC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	155, 519
MslI	CAYNNNNRTG	1 cut(s)	801
MunI	CAATTG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	423, 676
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
NlaIII	CATG	3 cut(s)	488, 582, 760
NlaIV	GGNNCC	3 cut(s)	293, 321, 511
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	582
PceI	AGGCCT	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	293, 321, 511
PspPI	GGNCC	2 cut(s)	319, 545
PspPPI	RGGWCCY	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	155, 519
Sau3AI	GATC	6 cut(s)	96, 190, 283, 509, 730, 772
Sau96I	GGNCC	2 cut(s)	319, 545
SchI	GAGTC	1 cut(s)	151
SinI	GGWCC	2 cut(s)	319, 545
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	3 cut(s)	65, 540, 609
SmoI	CTYRAG	3 cut(s)	65, 540, 609
Sse9I	AATT	3 cut(s)	274, 326, 720
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	105, 424
SspMI	CTAG	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	5 cut(s)	118, 193, 355, 375, 710
TasI	AATT	3 cut(s)	274, 326, 720
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	155, 519
Tru9I	TTAA	2 cut(s)	155, 519
TscAI	CASTG	3 cut(s)	78, 293, 479
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	267, 468, 471
TspRI	CASTG	3 cut(s)	78, 293, 479
VpaK11BI	GGWCC	2 cut(s)	319, 545
XceI	RCATGY	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.