Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0031066

Physical Location & Seq

Genomic Coordinates Forward (+)

62881232 .. 62887551

Gene Structure 6320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG371200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAATCTTGCTCTCTTCCTCTGCTTCTGCTTCAATCTTCACATCTTCACCATCCCAATCCCTCAAGCCACTGAACCCATCTCTCCCTTTCTTGATCTCCACCGCTAACCCACATCGAAAACCTTCAGGAAGAGCAAAGAGTCTTTTTCCTTTAAGAGTAGCAACCCAACCTCAGACCACAGACCCAGATCGACCCACCAAAACAGAGCAAGATGGGGAAAGTTACAATCTTGGGGATGAGGTTGAGGATGAAAGCTCAGCAACCAAGTTCAATTGGAGAGATCACTGGTACCCAGTTTCTTTGATTGAAGATTTGGACCCTAAATTGCCTACCCCATTTCAGCTTCTGGGTCGAGACATAGTTTTGTGGTTCGATAGGAACAAACAGGAATGGGTGGCTTTAGATGACAAATGCCCTCACCGCCTCGCGCCATTATCTGAAGGGAGGATTGATGAAGGTGGAAACTTGCAGTGTTCATACCATGGGTGGTCATTTGATGGGTGTGGATCCTGTGTTAAGATTCCACAGGCTTCACCTCAAGGTCCTGAAGCTCGTGCAGTCAGGTCTCCAAGAGCATGTGCCACTAGGTTTCCTACTCAGGTGTCTCAAGGCCTGCTCTTTGTCTGGCCTGATGAGAATGGTTGGGAAAGAGCCAATGCCTCCAAGCCTCCAATGCTACCTGATGAGTTTGGCAAACCTGAGTTTTCGACGGTGACAATCCAGCGTGATCTCTTCTATGGCTATGATACCCTCATGGAAAATGTGTCTGATCCTTCCCACATTGACTTTGCTCATCACAAGGTTACAGGGAGGAGAGATAGAGCTAAGCCTTTGCCATTTAAACTGGAAGATAGTGGCCCTTGGGGCTTTTCTGGAGCAAATGAGGGCAACCCACGGATTACTGCCAAGTTTATAGCGCCTTGTTATTATTTAAATAAAATAGAGATTGATACAAAGCTTCCACTAGTTGGTGATCAAAAATGGGTTATATGGATTTGTTCCTTCAATGTTCCAATGGCACCAGGGAAGACTCGCTCTATTGTTTGTAGTGCTCGAAACTTCTTCCAGTTCAGCATGCCAGGGCCTGCTTGGTGGCAGGTGAGAACTTCATGCTTATTTTATTTTCTAGCTGTGCTTTATTACCACCCATTAGGTAAACTAGCACAGGTGGTTGTTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009706 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016730 GO:0019439 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032441 GO:0032501 GO:0032502 GO:0033013 GO:0033015 GO:0034641 GO:0042170 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046149 GO:0046483 GO:0046700 GO:0048037 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051536 GO:0051540 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0090567 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

395

Amino Acids

44.4

Weight (kDa)

7.06

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	96 - 180	2.6e-24	Rieske [2Fe-2S] domain
PaO	PF08417	305 - 372	3.1e-07	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031066)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000366.1_g000046
rosa_samantha	Rh5AG371200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1090
Acc36I	ACCTGC	1 cut(s)	1090
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	291, 1021
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	105, 424
AclWI	GGATC	3 cut(s)	504, 517, 767
AcuI	CTGAAG	3 cut(s)	111, 462, 570
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	971
AgsI	TTSAA	4 cut(s)	36, 274, 311, 1009
AhlI	ACTAGT	1 cut(s)	967
AjnI	CCWGG	2 cut(s)	1024, 1081
AluBI	AGCT	6 cut(s)	258, 346, 554, 827, 961, 1133
AluI	AGCT	6 cut(s)	258, 346, 554, 827, 961, 1133
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	3 cut(s)	351, 573, 612
AlwI	GGATC	3 cut(s)	504, 517, 767
AlwNI	CAGNNNCTG	2 cut(s)	349, 1088
AoxI	GGCC	4 cut(s)	613, 629, 859, 1085
Asp700I	GAANNNNTTC	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	433, 922
AspS9I	GGNCC	4 cut(s)	319, 545, 860, 1085
AsuHPI	GGTGA	6 cut(s)	42, 413, 528, 727, 986, 1114
AvaII	GGWCC	2 cut(s)	319, 545
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	2 cut(s)	291, 1021
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	1037
Bbv12I	GWGCWC	1 cut(s)	1057
BccI	CCATC	4 cut(s)	61, 88, 209, 494
BciT130I	CCWGG	2 cut(s)	1026, 1083
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	3 cut(s)	351, 573, 612
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	4 cut(s)	588, 968, 1130, 1163
BfoI	RGCGCY	1 cut(s)	923
BfuAI	ACCTGC	1 cut(s)	1090
BglI	GCCNNNNNGGC	1 cut(s)	867
BlpI	GCTNAGC	2 cut(s)	259, 828
Bme1390I	CCNGG	2 cut(s)	1026, 1083
Bme18I	GGWCC	2 cut(s)	319, 545
BmgT120I	GGNCC	4 cut(s)	319, 545, 860, 1085
BmiI	GGNNCC	4 cut(s)	293, 321, 511, 1023
BmrFI	CCNGG	2 cut(s)	1026, 1083
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	1037
BpmI	CTGGAG	1 cut(s)	897
Bpu1102I	GCTNAGC	2 cut(s)	259, 828
BpuEI	CTTGAG	3 cut(s)	50, 525, 594
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	5 cut(s)	484, 863, 896, 1025, 1082
Bsc4I	CCNNNNNNNGG	1 cut(s)	971
Bse1I	ACTGG	4 cut(s)	293, 296, 852, 1069
BseBI	CCWGG	2 cut(s)	1026, 1083
BseDI	CCNNGG	5 cut(s)	484, 863, 896, 1025, 1082
BseGI	GGATG	3 cut(s)	53, 244, 256
BseLI	CCNNNNNNNGG	1 cut(s)	971
BseMII	CTCAG	4 cut(s)	188, 273, 614, 693
BseNI	ACTGG	4 cut(s)	293, 296, 852, 1069
BseRI	GAGGAG	1 cut(s)	829
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	4 cut(s)	615, 631, 861, 1087
BshNI	GGYRCC	2 cut(s)	291, 1021
BsiHKAI	GWGCWC	1 cut(s)	1057
BslI	CCNNNNNNNGG	1 cut(s)	971
BsmAI	GTCTC	3 cut(s)	351, 573, 612
BsnI	GGCC	4 cut(s)	615, 631, 861, 1087
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
Bsp1720I	GCTNAGC	2 cut(s)	259, 828
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	2 cut(s)	105, 424
BspANI	GGCC	4 cut(s)	615, 631, 861, 1087
BspCNI	CTCAG	4 cut(s)	187, 272, 613, 694
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	4 cut(s)	293, 321, 511, 1023
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	3 cut(s)	504, 517, 767
BspQI	GCTCTTC	1 cut(s)	127
BspT107I	GGYRCC	2 cut(s)	291, 1021
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	4 cut(s)	293, 296, 852, 1069
BssECI	CCNNGG	5 cut(s)	484, 863, 896, 1025, 1082
BssMI	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	484, 863
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	1026, 1083
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	3 cut(s)	22, 127, 740
BstC8I	GCNNGC	3 cut(s)	617, 1079, 1089
BstDEI	CTNAG	5 cut(s)	174, 259, 600, 702, 828
BstDSI	CCRYGG	2 cut(s)	484, 896
BstF5I	GGATG	3 cut(s)	53, 244, 256
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	923
BstHHI	GCGC	2 cut(s)	433, 922
BstKTI	GATC	7 cut(s)	99, 193, 286, 512, 733, 775, 979
BstMAI	GTCTC	3 cut(s)	351, 573, 612
BstMBI	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	423, 676, 867
BstNI	CCWGG	2 cut(s)	1026, 1083
BstNSI	RCATGY	2 cut(s)	582, 1081
BstSCI	CCNGG	2 cut(s)	1024, 1081
BstUI	CGCG	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	1037
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	4 cut(s)	615, 631, 861, 1087
BtgI	CCRYGG	2 cut(s)	484, 896
BtsCI	GGATG	3 cut(s)	53, 244, 256
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	71, 286, 479
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	3 cut(s)	617, 1079, 1089
CaiI	CAGNNNCTG	2 cut(s)	349, 1088
CfoI	GCGC	2 cut(s)	433, 922
Cfr13I	GGNCC	4 cut(s)	319, 545, 860, 1085
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	485, 579, 757, 1078, 1113
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	174, 259, 600, 702, 828
DpnI	GATC	7 cut(s)	98, 192, 285, 511, 732, 774, 978
DpnII	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
DraI	TTTAAA	2 cut(s)	844, 936
Eam1104I	CTCTTC	3 cut(s)	22, 127, 740
EarI	CTCTTC	3 cut(s)	22, 127, 740
Eco130I	CCWWGG	2 cut(s)	484, 863
Eco147I	AGGCCT	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	319, 545
Eco57I	CTGAAG	3 cut(s)	111, 462, 570
EcoO109I	RGGNCCY	2 cut(s)	545, 1085
EcoRII	CCWGG	2 cut(s)	1024, 1081
EcoT14I	CCWWGG	2 cut(s)	484, 863
ErhI	CCWWGG	2 cut(s)	484, 863
FaeI	CATG	5 cut(s)	488, 582, 760, 1081, 1116
FatI	CATG	5 cut(s)	484, 578, 756, 1077, 1112
FbaI	TGATCA	1 cut(s)	976
FokI	GGATG	3 cut(s)	40, 251, 263
FspBI	CTAG	4 cut(s)	588, 968, 1130, 1163
GlaI	GCGC	2 cut(s)	432, 921
GsuI	CTGGAG	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	923
HaeIII	GGCC	4 cut(s)	615, 631, 861, 1087
HhaI	GCGC	2 cut(s)	433, 922
Hin1II	CATG	5 cut(s)	488, 582, 760, 1081, 1116
Hin6I	GCGC	2 cut(s)	431, 920
HinP1I	GCGC	2 cut(s)	431, 920
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	3 cut(s)	142, 523, 1033
HphI	GGTGA	6 cut(s)	42, 413, 528, 727, 986, 1114
Hpy166II	GTNNAC	1 cut(s)	1160
Hpy188I	TCNGA	3 cut(s)	177, 442, 772
Hpy188III	TCNNGA	5 cut(s)	94, 129, 356, 548, 876
Hpy8I	GTNNAC	1 cut(s)	1160
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	5 cut(s)	135, 437, 452, 786, 1015
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4V	TGCA	2 cut(s)	472, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	423, 676, 867
HpyF3I	CTNAG	5 cut(s)	174, 259, 600, 702, 828
Hsp92II	CATG	5 cut(s)	488, 582, 760, 1081, 1116
HspAI	GCGC	2 cut(s)	431, 920
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	878
MaeI	CTAG	4 cut(s)	588, 968, 1130, 1163
MaeIII	GTNAC	3 cut(s)	224, 715, 805
MalI	GATC	7 cut(s)	98, 192, 285, 511, 732, 774, 978
MboI	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
MboII	GAAGA	9 cut(s)	9, 31, 39, 144, 323, 727, 863, 1042, 1057
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	1 cut(s)	1057
MluCI	AATT	2 cut(s)	274, 326
MlyI	GAGTC	2 cut(s)	151, 1027
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	4 cut(s)	155, 519, 843, 935
MspR9I	CCNGG	2 cut(s)	1026, 1083
MunI	CAATTG	1 cut(s)	274
MvaI	CCWGG	2 cut(s)	1026, 1083
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	423, 676, 867
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
NlaIII	CATG	5 cut(s)	488, 582, 760, 1081, 1116
NlaIV	GGNNCC	4 cut(s)	293, 321, 511, 1023
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	2 cut(s)	582, 1081
PaeI	GCATGC	1 cut(s)	1081
PaqCI	CACCTGC	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	523
PflMI	CCANNNNNTGG	1 cut(s)	971
PleI	GAGTC	2 cut(s)	150, 1027
PpsI	GAGTC	2 cut(s)	150, 1027
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	1024, 1081
PspGI	CCWGG	2 cut(s)	1024, 1081
PspN4I	GGNNCC	4 cut(s)	293, 321, 511, 1023
PspPI	GGNCC	4 cut(s)	319, 545, 860, 1085
PspPPI	RGGWCCY	1 cut(s)	545
PstNI	CAGNNNCTG	2 cut(s)	349, 1088
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	4 cut(s)	155, 519, 843, 935
Sau3AI	GATC	7 cut(s)	96, 190, 283, 509, 730, 772, 976
Sau96I	GGNCC	4 cut(s)	319, 545, 860, 1085
SchI	GAGTC	2 cut(s)	151, 1027
ScrFI	CCNGG	2 cut(s)	1026, 1083
SduI	GDGCHC	1 cut(s)	1057
SinI	GGWCC	2 cut(s)	319, 545
SmiI	ATTTAAAT	1 cut(s)	936
SmlI	CTYRAG	3 cut(s)	65, 540, 609
SmoI	CTYRAG	3 cut(s)	65, 540, 609
SpeI	ACTAGT	1 cut(s)	967
SphI	GCATGC	1 cut(s)	1081
Sse9I	AATT	2 cut(s)	274, 326
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	105, 424
SspMI	CTAG	4 cut(s)	588, 968, 1130, 1163
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	1024, 1081
StyI	CCWWGG	2 cut(s)	484, 863
SwaI	ATTTAAAT	1 cut(s)	936
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	6 cut(s)	118, 193, 355, 375, 710, 1057
TasI	AATT	2 cut(s)	274, 326
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	4 cut(s)	155, 519, 843, 935
Tru9I	TTAA	4 cut(s)	155, 519, 843, 935
TscAI	CASTG	3 cut(s)	78, 293, 479
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	4 cut(s)	267, 468, 471, 1101
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	3 cut(s)	78, 293, 479
Van91I	CCANNNNNTGG	1 cut(s)	971
VpaK11BI	GGWCC	2 cut(s)	319, 545
XceI	RCATGY	2 cut(s)	582, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1089
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	4 cut(s)	588, 968, 1130, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.