Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000370.1

Orthogroup ID

OG0023041

Physical Location & Seq

Genomic Coordinates Reverse (-)

100674 .. 100931

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000370.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgcaagaactgggcagcaccgcgtgggaggatgaaccatatatggcgctgtcatcttcaggtaaagaagagtgcaaacaagcctgtttggaggatttgaactgtcaggctgcagtttttgacggttcaagctgcagaaagcagaggcttcctttgagatatggaagaagagattcagatacttcgaacatagttctcctgaaggaggctgtcatgatttatgcaactccagctccaggcacaattgttccaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

85

Amino Acids

9.37

Weight (kDa)

5.02

Isoelectric Point (pI)

77.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023041)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000370.1_g000025 Rmu_sc0005416.1_g000002
rosa_roxburghii	Rroxscaffold_1G00028460
rosa_samantha	Rh5CG483500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	42, 221
AdeI	CACNNNGTG	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	205, 236
AgsI	TTSAA	2 cut(s)	100, 129
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	132, 233
AluI	AGCT	2 cut(s)	132, 233
ApeKI	GCWGC	3 cut(s)	15, 110, 132
Asp700I	GAANNNNTTC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	27, 97, 119
BciT130I	CCWGG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	111, 133
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	3 cut(s)	16, 111, 133
BlsI	GCNGC	3 cut(s)	17, 112, 134
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	213, 219
Bpu14I	TTCGAA	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 236
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	205, 236
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	27, 97, 119
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	205, 236
Bsp119I	TTCGAA	1 cut(s)	185
BspACI	CCGC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	213
BspMAI	CTGCAG	2 cut(s)	115, 137
BspT104I	TTCGAA	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	104, 125
Bst6I	CTCTTC	2 cut(s)	63, 163
BstBI	TTCGAA	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	111, 133
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	27, 97, 119
BtsCI	GGATG	1 cut(s)	37
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	83, 110, 132, 148, 209, 233
CviKI_1	RGCY	6 cut(s)	83, 110, 132, 148, 209, 233
DraIII	CACNNNGTG	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	63, 163
EarI	CTCTTC	2 cut(s)	63, 163
Eco57I	CTGAAG	2 cut(s)	42, 221
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	217
FaiI	YATR	7 cut(s)	40, 42, 44, 162, 191, 215, 222
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	16, 111, 133
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	16, 111, 133
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	16, 111, 133
GsuI	CTGGAG	2 cut(s)	213, 219
HaeII	RGCGCY	1 cut(s)	50
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	199, 214
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	104, 125
HpyCH4V	TGCA	5 cut(s)	4, 75, 113, 135, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	45, 92, 97, 212, 222, 243, 249
Lsp1109I	GCAGC	3 cut(s)	27, 97, 119
MboII	GAAGA	4 cut(s)	48, 80, 177, 180
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	4 cut(s)	22, 85, 138, 199
MroXI	GAANNNNTTC	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	185
PagI	TCATGA	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	17, 112, 134
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PstI	CTGCAG	2 cut(s)	115, 137
SatI	GCNGC	3 cut(s)	16, 111, 133
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	3 cut(s)	64, 134, 235
SfcI	CTRYAG	2 cut(s)	111, 133
SfuI	TTCGAA	1 cut(s)	185
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	104, 125
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	15, 110, 132
TspDTI	ATGAA	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.