Rroxscaffold_1G00028460

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
36249409 .. 36251608
2200 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00028460.1

Sequence Viewer

Length: 258 bp
ATGCAAGAACTGGGCTGCACTGCGTGGGGGGATGAGCCATATATGGCTCTGTCATCTTCAGGTAAAGAAGTTTGCAAACAAGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCAGTTTTTGACGGTTCAAGCTGTAGAAAGCAGAGGCTTCCTTTGAGATATGGAAGAAGAGATTCAGATACTTCAAACATAGTTCTCATGTTGGAGGCTGTCATGATTTCTGCAACTCCAGCTCCAAGCACAGTTGTTCCAAAATAA

Protein Analysis

85

Amino Acids

9.23

Weight (kDa)

5.24

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023041)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000370.1_g000025 Rmu_sc0005416.1_g000002
rosa_roxburghii Rroxscaffold_1G00028460
rosa_samantha Rh5CG483500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 100, 129, 186
AluBI AGCT 2 cut(s) 132, 233
AluI AGCT 2 cut(s) 132, 233
ApeKI GCWGC 2 cut(s) 15, 110
Asp700I GAANNNNTTC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 2, 97
BfmI CTRYAG 2 cut(s) 111, 133
BisI GCNGC 2 cut(s) 16, 111
BlsI GCNGC 2 cut(s) 17, 112
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 2, 97
BspHI TCATGA 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 104, 125, 244
Bst6I CTCTTC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 111, 133
BstV1I GCAGC 2 cut(s) 2, 97
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 213
CviAII CATG 2 cut(s) 199, 214
CviJI RGCY 9 cut(s) 15, 37, 47, 83, 110, 132, 148, 209, 233
CviKI_1 RGCY 9 cut(s) 15, 37, 47, 83, 110, 132, 148, 209, 233
DraIII CACNNNGTG 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 2 cut(s) 202, 217
FaiI YATR 7 cut(s) 40, 42, 44, 162, 191, 200, 215
FatI CATG 2 cut(s) 198, 213
Fnu4HI GCNGC 2 cut(s) 16, 111
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 16, 111
GluI GCNGC 2 cut(s) 16, 111
GsuI CTGGAG 1 cut(s) 213
Hin1II CATG 2 cut(s) 202, 217
HinfI GANTC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 214
HpyCH4III ACNGT 3 cut(s) 104, 125, 244
HpyCH4V TGCA 5 cut(s) 4, 18, 75, 113, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 2 cut(s) 202, 217
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 45, 92, 97, 243
Lsp1109I GCAGC 2 cut(s) 2, 97
MboII GAAGA 3 cut(s) 48, 177, 180
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 85, 138, 199
MroXI GAANNNNTTC 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 2 cut(s) 202, 217
PagI TCATGA 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 17, 112
PstI CTGCAG 1 cut(s) 115
SatI GCNGC 2 cut(s) 16, 111
SetI ASST 3 cut(s) 64, 134, 235
SfcI CTRYAG 2 cut(s) 111, 133
TaaI ACNGT 3 cut(s) 104, 125, 244
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 15, 110
TspRI CASTG 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.