Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000373.1

Orthogroup ID

OG0031067

Physical Location & Seq

Genomic Coordinates Forward (+)

119390 .. 124275

Gene Structure 4886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000373.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgcttactcttgcacaagctgccacttcggaagcaaatagagctactatgaaggcaaataaaactaaagacatcattctcatgacaaggcttatgaatgatgcgctccagaatgagtacctcaatgaagagaaccctggaaagctatggaatgtacttgactacaattcagaagcctttcgtattaaatctttgattgagtcctgtggaaagaacatcactgatacgatgttcatcaagaagactctatctaccttccttgcctctgcactaatgatttccaagaattatagaattgatcctcctctaactcataatggtgttgggtcttcaccgttgatgaactctggcgaccacatcaatctctctctttccctccctccctcctcccccttcagcaccgtcgtcgaggcccaatccgaggccatcagaatcgcatcgtcgttgacactcaaatcggtccgacatcaaggctctcaattcgtcgtcatgcagcacggtttcgactcaaacaaagactccgacacagtcgtcgatgcacaaatcggaggtcacgcaatggggacgccagccaacgacatctgcaagggatcgaagaggcagacgatcaatgacgacgatgttttgaaggcgttggaggacattgagtttcccgagttcatcgagcctctgaaggcctctcttgaagggctgagggagaagaatgctaggaagaaggcaggaacatcaaaggcaacggaagcgaaaacaaaagaggcgaaaacaaaggaagtgaaaaagaagaggaaattggaagagccgccgcccaaggaagaggaagaaaaccaagatgaggatgggggtgacagcgctagcgaaagctcaagcaaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

291

Amino Acids

31.95

Weight (kDa)

5.72

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031067)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000373.1_g000024 Rmu_sc0008451.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AciI	CCGC	2 cut(s)	800, 803
AclWI	GGATC	2 cut(s)	293, 598
AcuI	CTGAAG	2 cut(s)	379, 692
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	2 cut(s)	119, 156
AfeI	AGCGCT	1 cut(s)	850
AfiI	CCNNNNNNNGG	2 cut(s)	421, 832
AgsI	TTSAA	2 cut(s)	628, 686
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	773, 805
AluBI	AGCT	4 cut(s)	20, 44, 145, 861
AluI	AGCT	4 cut(s)	20, 44, 145, 861
AlwI	GGATC	2 cut(s)	293, 598
Ama87I	CYCGRG	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	850
AoxI	GGCC	3 cut(s)	411, 423, 675
ApeKI	GCWGC	2 cut(s)	20, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	106, 851
AspS9I	GGNCC	2 cut(s)	412, 460
AsuHPI	GGTGA	2 cut(s)	324, 854
AsuNHI	GCTAGC	1 cut(s)	851
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	248, 321
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	2 cut(s)	7, 505
BccI	CCATC	2 cut(s)	434, 830
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	2 cut(s)	708, 852
BfoI	RGCGCY	1 cut(s)	852
BisI	GCNGC	4 cut(s)	21, 494, 800, 803
BlsI	GCNGC	4 cut(s)	22, 495, 801, 804
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	2 cut(s)	412, 460
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	91, 446, 526
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	2 cut(s)	248, 321
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	847
BsaBI	GATNNNNATC	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	136, 420, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 832
Bse3DI	GCAATG	1 cut(s)	564
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	136, 420, 807
BseGI	GGATG	1 cut(s)	841
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	421, 832
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	683
BseRI	GAGGAG	2 cut(s)	294, 376
BseXI	GCAGC	2 cut(s)	7, 505
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	413, 425, 677
BsiHKCI	CYCGRG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	2 cut(s)	421, 832
BsmFI	GGGAC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	3 cut(s)	413, 425, 677
BsoBI	CYCGRG	1 cut(s)	653
Bsp143I	GATC	3 cut(s)	298, 590, 606
BspACI	CCGC	2 cut(s)	800, 803
BspANI	GGCC	3 cut(s)	413, 425, 677
BspCNI	CTCAG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	293, 598
BspQI	GCTCTTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	564
BssECI	CCNNGG	3 cut(s)	136, 420, 807
BssMI	GATC	3 cut(s)	298, 590, 606
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	4 cut(s)	336, 403, 500, 529
Bst6I	CTCTTC	5 cut(s)	123, 590, 776, 789, 807
BstACI	GRCGYC	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	570, 853
BstDEI	CTNAG	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	841
BstH2I	RGCGCY	1 cut(s)	852
BstHHI	GCGC	2 cut(s)	106, 851
BstKTI	GATC	3 cut(s)	301, 593, 609
BstMBI	GATC	3 cut(s)	298, 590, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 41, 740
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	7, 505
BstV2I	GAAGAC	2 cut(s)	248, 321
BsuRI	GGCC	3 cut(s)	413, 425, 677
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	570, 853
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	2 cut(s)	106, 851
Cfr13I	GGNCC	2 cut(s)	412, 460
CpoI	CGGWCCG	1 cut(s)	460
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	118, 155
CspI	CGGWCCG	1 cut(s)	460
CviAII	CATG	2 cut(s)	82, 490
CviQI	GTAC	2 cut(s)	118, 155
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	3 cut(s)	300, 592, 608
DpnII	GATC	3 cut(s)	298, 590, 606
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
Eam1104I	CTCTTC	5 cut(s)	123, 590, 776, 789, 807
EarI	CTCTTC	5 cut(s)	123, 590, 776, 789, 807
Eco130I	CCWWGG	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	460
Eco47III	AGCGCT	1 cut(s)	850
Eco57I	CTGAAG	2 cut(s)	379, 692
Eco88I	CYCGRG	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	2 cut(s)	85, 493
FaiI	YATR	7 cut(s)	50, 83, 95, 148, 291, 315, 491
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	2 cut(s)	81, 489
Fnu4HI	GCNGC	4 cut(s)	21, 494, 800, 803
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	4 cut(s)	21, 494, 800, 803
FspBI	CTAG	2 cut(s)	708, 852
GlaI	GCGC	2 cut(s)	105, 850
GluI	GCNGC	4 cut(s)	21, 494, 800, 803
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	852
HaeIII	GGCC	3 cut(s)	413, 425, 677
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	2 cut(s)	106, 851
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	2 cut(s)	85, 493
Hin6I	GCGC	2 cut(s)	104, 849
HinP1I	GCGC	2 cut(s)	104, 849
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	5 cut(s)	200, 244, 432, 506, 518
HphI	GGTGA	2 cut(s)	324, 854
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	8 cut(s)	31, 172, 421, 431, 464, 523, 548, 672
Hpy188III	TCNNGA	5 cut(s)	82, 109, 238, 653, 683
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	6 cut(s)	407, 410, 445, 488, 536, 620
HpyAV	CCTTC	7 cut(s)	46, 265, 403, 622, 667, 680, 709
HpyCH4III	ACNGT	4 cut(s)	336, 403, 500, 529
HpyCH4V	TGCA	5 cut(s)	14, 269, 493, 539, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 41, 740
HpyF3I	CTNAG	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	2 cut(s)	85, 493
HspAI	GCGC	2 cut(s)	104, 849
Kzo9I	GATC	3 cut(s)	298, 590, 606
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	122, 123, 150, 217, 333, 582, 705
Lsp1109I	GCAGC	2 cut(s)	7, 505
LweI	GCATC	3 cut(s)	91, 446, 526
MaeI	CTAG	2 cut(s)	708, 852
MaeIII	GTNAC	2 cut(s)	551, 842
MalI	GATC	3 cut(s)	300, 592, 608
MboI	GATC	3 cut(s)	298, 590, 606
MluCI	AATT	5 cut(s)	166, 286, 294, 479, 788
MlyI	GAGTC	4 cut(s)	209, 238, 500, 512
MmeI	TCCRAC	3 cut(s)	487, 546, 615
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	2 cut(s)	80, 318
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	20, 41, 740
NdeII	GATC	3 cut(s)	298, 590, 606
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	2 cut(s)	85, 493
NmuCI	GTSAC	2 cut(s)	551, 842
PagI	TCATGA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	789
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	432
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	22, 495, 801, 804
PleI	GAGTC	4 cut(s)	208, 238, 500, 512
PpsI	GAGTC	4 cut(s)	208, 238, 500, 512
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	412, 460
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	2 cut(s)	119, 156
RsaNI	GTAC	2 cut(s)	118, 155
RseI	CAYNNNNRTG	2 cut(s)	80, 318
Rsr2I	CGGWCCG	1 cut(s)	460
RsrII	CGGWCCG	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	21, 494, 800, 803
Sau3AI	GATC	3 cut(s)	298, 590, 606
Sau96I	GGNCC	2 cut(s)	412, 460
SchI	GAGTC	4 cut(s)	209, 238, 500, 512
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	7 cut(s)	22, 46, 123, 147, 257, 553, 863
SfaNI	GCATC	3 cut(s)	91, 446, 526
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	80, 318
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
Sse9I	AATT	5 cut(s)	166, 286, 294, 479, 788
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	2 cut(s)	800, 803
SspMI	CTAG	2 cut(s)	708, 852
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	4 cut(s)	336, 403, 500, 529
TaqI	TCGA	5 cut(s)	408, 504, 534, 593, 663
TaqII	GACCGA	1 cut(s)	448
TasI	AATT	5 cut(s)	166, 286, 294, 479, 788
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	2 cut(s)	802, 805
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	551, 842
TseI	GCWGC	2 cut(s)	20, 493
Tsp45I	GTSAC	2 cut(s)	551, 842
TspDTI	ATGAA	6 cut(s)	65, 110, 141, 223, 356, 649
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	708, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.