Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008451.1

Orthogroup ID

OG0031067

Physical Location & Seq

Genomic Coordinates Reverse (-)

15817 .. 21291

Gene Structure 5475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008451.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgcacactcagtgtgccttgtctggcctagtgaggcagcgagctatttgtttgatcaaatggacgcaacctcctagtggcaggatgaaattgagtgtcgccagaattatttatgtgtggcaacatagtgggaaagttgtgttatttgtaatgatgcttcttcaatatagagctatctttccggctgaagagatttggaatacgatccaagagccaagtcagaacatgcttactcctgcacaagctgccagttcggaagcaaatagagctactatgaaggcaaataaaactaaagacatcattctcatgacaaggcttatgaatgatgcgctccagaatgagtacctcaatgaagagaaccctggaaagctatggaatgtacttgactacaattcagaagcctttcgtattaaatctttgatggagtcctgtggaaagaacatcactgatacgatgttcatcaagaagactctatctaccttccttgcctctgcactaatgatttccaagaattatagaattgatcctcctctaactcataatggtgttgggtcttcaccgttgatgaactctggcgaccacatcaatctctctctttccctccctccctcctcccccttcagcaccgtcgtcgaggcccaatccgaggccatcagaatcgcgtcgtcgttgacactcaaatcggtccgacatcaaggctctcaattcgtcgtcatgcagcacggtttcgactcaaacaaagactccgacacagtcgtcgatgcacaaatcggaggtcacgcaatggggacgccaaccaacgacatctgcaagggatcgaagaggcaaacgatcaatgacgacgatgttttgaaggcgttggaggacattgagtttcccgagttcatcgagcctctgaaggcctctcttgaagggctgagggagaagaatgctgggaagaaggcaggaacatcaaaggcaaaggaagcgaaaacaaaagaggcgaaaacaaaggaagtgaaaaagaagaggaaattggaagagccgccgcccaaggaagaggaagaaaaccaagatgaggatgggggcgacagcgctagcgaaagctcgagcaaagaaagaacaatttctactagttttgtattgctttttctttcaggctgtagttcggagctgaatcgaagttcatgtttgttagaatggttcactctggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

398

Amino Acids

44.15

Weight (kDa)

7.05

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031067)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000373.1_g000024 Rmu_sc0008451.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	755
AccII	CGCG	1 cut(s)	662
AciI	CCGC	2 cut(s)	1025, 1028
AclWI	GGATC	3 cut(s)	199, 518, 823
AcuI	CTGAAG	3 cut(s)	207, 604, 917
AcyI	GRCGYC	1 cut(s)	791
AdeI	CACNNNGTG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	344, 381
AfeI	AGCGCT	1 cut(s)	1075
AfiI	CCNNNNNNNGG	3 cut(s)	77, 646, 1057
AgsI	TTSAA	3 cut(s)	164, 853, 911
AhlI	ACTAGT	1 cut(s)	1112
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AluBI	AGCT	7 cut(s)	44, 173, 245, 269, 370, 1086, 1153
AluI	AGCT	7 cut(s)	44, 173, 245, 269, 370, 1086, 1153
AlwI	GGATC	3 cut(s)	199, 518, 823
Ama87I	CYCGRG	2 cut(s)	878, 1087
Aor51HI	AGCGCT	1 cut(s)	1075
AoxI	GGCC	4 cut(s)	25, 636, 648, 900
ApeKI	GCWGC	3 cut(s)	37, 245, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
Asp700I	GAANNNNTTC	2 cut(s)	402, 1105
AspLEI	GCGC	2 cut(s)	331, 1076
AspS9I	GGNCC	2 cut(s)	637, 685
AsuHPI	GGTGA	1 cut(s)	549
AsuNHI	GCTAGC	1 cut(s)	1076
AvaI	CYCGRG	2 cut(s)	878, 1087
AvaII	GGWCC	1 cut(s)	685
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
BbsI	GAAGAC	2 cut(s)	473, 546
BbvCI	CCTCAGC	1 cut(s)	917
BbvI	GCAGC	3 cut(s)	49, 232, 730
BccI	CCATC	3 cut(s)	415, 659, 1055
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	54
BcuI	ACTAGT	1 cut(s)	1112
BfaI	CTAG	4 cut(s)	29, 75, 1077, 1113
BfmI	CTRYAG	1 cut(s)	1141
BfoI	RGCGCY	1 cut(s)	1077
BisI	GCNGC	5 cut(s)	38, 246, 719, 1025, 1028
BlsI	GCNGC	5 cut(s)	39, 247, 720, 1026, 1029
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	685
BmeT110I	CYCGRG	2 cut(s)	878, 1087
BmgT120I	GGNCC	2 cut(s)	637, 685
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	144, 316, 751
BmtI	GCTAGC	1 cut(s)	1080
BpiI	GAAGAC	2 cut(s)	473, 546
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	791
BsaJI	CCNNGG	3 cut(s)	361, 645, 1032
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 728, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 646, 1057
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	361, 645, 1032
BseGI	GGATG	2 cut(s)	90, 1066
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	3 cut(s)	77, 646, 1057
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	23, 908
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	519, 601
BseXI	GCAGC	3 cut(s)	49, 232, 730
BseYI	CCCAGC	1 cut(s)	932
BsgI	GTGCAG	2 cut(s)	222, 477
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	4 cut(s)	27, 638, 650, 902
BsiHKCI	CYCGRG	2 cut(s)	878, 1087
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	3 cut(s)	77, 646, 1057
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	4 cut(s)	27, 638, 650, 902
BsoBI	CYCGRG	2 cut(s)	878, 1087
Bsp143I	GATC	5 cut(s)	54, 204, 523, 815, 831
BspACI	CCGC	2 cut(s)	1025, 1028
BspANI	GGCC	4 cut(s)	27, 638, 650, 902
BspCNI	CTCAG	2 cut(s)	22, 909
BspFNI	CGCG	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	306
BspOI	GCTAGC	1 cut(s)	1080
BspPI	GGATC	3 cut(s)	199, 518, 823
BspQI	GCTCTTC	1 cut(s)	1014
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	361, 645, 1032
BssMI	GATC	5 cut(s)	54, 204, 523, 815, 831
BssNI	GRCGYC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	1032
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	4 cut(s)	561, 628, 725, 754
Bst6I	CTCTTC	6 cut(s)	183, 348, 815, 1001, 1014, 1032
BstACI	GRCGYC	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	42, 1078
BstDEI	CTNAG	2 cut(s)	9, 917
BstF5I	GGATG	2 cut(s)	90, 1066
BstFNI	CGCG	1 cut(s)	662
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	2 cut(s)	331, 1076
BstKTI	GATC	5 cut(s)	57, 207, 526, 818, 834
BstMBI	GATC	5 cut(s)	54, 204, 523, 815, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 266, 965
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	3 cut(s)	49, 232, 730
BstV2I	GAAGAC	2 cut(s)	473, 546
BsuRI	GGCC	4 cut(s)	27, 638, 650, 902
BtsCI	GGATG	2 cut(s)	90, 1066
BtsIMutI	CAGTG	2 cut(s)	17, 444
Cac8I	GCNNGC	2 cut(s)	42, 1078
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	2 cut(s)	331, 1076
Cfr13I	GGNCC	2 cut(s)	637, 685
CpoI	CGGWCCG	1 cut(s)	685
CseI	GACGC	3 cut(s)	73, 651, 799
Csp6I	GTAC	2 cut(s)	343, 380
CspI	CGGWCCG	1 cut(s)	685
CviAII	CATG	5 cut(s)	226, 307, 715, 1167, 1194
CviQI	GTAC	2 cut(s)	343, 380
DdeI	CTNAG	2 cut(s)	9, 917
DpnI	GATC	5 cut(s)	56, 206, 525, 817, 833
DpnII	GATC	5 cut(s)	54, 204, 523, 815, 831
DraIII	CACNNNGTG	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	755
DseDI	GACNNNNNNGTC	1 cut(s)	755
Eam1104I	CTCTTC	6 cut(s)	183, 348, 815, 1001, 1014, 1032
EarI	CTCTTC	6 cut(s)	183, 348, 815, 1001, 1014, 1032
Eco130I	CCWWGG	1 cut(s)	1032
Eco147I	AGGCCT	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	685
Eco47III	AGCGCT	1 cut(s)	1075
Eco57I	CTGAAG	3 cut(s)	207, 604, 917
Eco88I	CYCGRG	2 cut(s)	878, 1087
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	1032
FaeI	CATG	5 cut(s)	229, 310, 718, 1170, 1197
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	5 cut(s)	225, 306, 714, 1166, 1193
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	38, 246, 719, 1025, 1028
FokI	GGATG	2 cut(s)	97, 1073
Fsp4HI	GCNGC	5 cut(s)	38, 246, 719, 1025, 1028
FspBI	CTAG	4 cut(s)	29, 75, 1077, 1113
GlaI	GCGC	2 cut(s)	330, 1075
GluI	GCNGC	5 cut(s)	38, 246, 719, 1025, 1028
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	1077
HaeIII	GGCC	4 cut(s)	27, 638, 650, 902
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	3 cut(s)	73, 651, 799
HhaI	GCGC	2 cut(s)	331, 1076
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	5 cut(s)	229, 310, 718, 1170, 1197
Hin6I	GCGC	2 cut(s)	329, 1074
HinP1I	GCGC	2 cut(s)	329, 1074
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	6 cut(s)	425, 469, 657, 731, 743, 1156
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	2 cut(s)	672, 1185
Hpy188III	TCNNGA	5 cut(s)	307, 334, 463, 878, 908
Hpy8I	GTNNAC	2 cut(s)	672, 1185
Hpy99I	CGWCG	7 cut(s)	632, 635, 667, 670, 713, 761, 845
HpyAV	CCTTC	7 cut(s)	271, 490, 628, 847, 892, 905, 934
HpyCH4III	ACNGT	4 cut(s)	561, 628, 725, 754
HpyCH4V	TGCA	6 cut(s)	4, 239, 494, 718, 764, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 266, 965
HpyF3I	CTNAG	2 cut(s)	9, 917
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	5 cut(s)	229, 310, 718, 1170, 1197
HspAI	GCGC	2 cut(s)	329, 1074
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	54, 204, 523, 815, 831
LguI	GCTCTTC	1 cut(s)	1014
LmnI	GCTCC	2 cut(s)	336, 1150
Lsp1109I	GCAGC	3 cut(s)	49, 232, 730
LweI	GCATC	3 cut(s)	144, 316, 751
MaeI	CTAG	4 cut(s)	29, 75, 1077, 1113
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	5 cut(s)	56, 206, 525, 817, 833
MboI	GATC	5 cut(s)	54, 204, 523, 815, 831
MluCI	AATT	8 cut(s)	89, 105, 391, 511, 519, 704, 1013, 1104
MlyI	GAGTC	4 cut(s)	434, 463, 725, 737
MmeI	TCCRAC	3 cut(s)	712, 771, 840
MroXI	GAANNNNTTC	2 cut(s)	402, 1105
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	305, 543
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	245, 266, 965
NdeII	GATC	5 cut(s)	54, 204, 523, 815, 831
NheI	GCTAGC	1 cut(s)	1076
NlaIII	CATG	5 cut(s)	229, 310, 718, 1170, 1197
NmuCI	GTSAC	1 cut(s)	776
NspI	RCATGY	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	1087
PagI	TCATGA	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	902
PciSI	GCTCTTC	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	934
PdmI	GAANNNNTTC	2 cut(s)	402, 1105
PfeI	GAWTC	2 cut(s)	657, 1156
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	5 cut(s)	39, 247, 720, 1026, 1029
PleI	GAGTC	4 cut(s)	433, 463, 725, 737
PpsI	GAGTC	4 cut(s)	433, 463, 725, 737
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	637, 685
PspXI	VCTCGAGB	1 cut(s)	1087
PsrI	GAACNNNNNNTAC	2 cut(s)	1093, 1125
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	2 cut(s)	344, 381
RsaNI	GTAC	2 cut(s)	343, 380
RseI	CAYNNNNRTG	2 cut(s)	305, 543
Rsr2I	CGGWCCG	1 cut(s)	685
RsrII	CGGWCCG	1 cut(s)	685
SapI	GCTCTTC	1 cut(s)	1014
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	5 cut(s)	38, 246, 719, 1025, 1028
Sau3AI	GATC	5 cut(s)	54, 204, 523, 815, 831
Sau96I	GGNCC	2 cut(s)	637, 685
SchI	GAGTC	4 cut(s)	434, 463, 725, 737
ScrFI	CCNGG	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	144, 316, 751
SfcI	CTRYAG	1 cut(s)	1141
Sfr274I	CTCGAG	1 cut(s)	1087
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	1 cut(s)	1087
SmiMI	CAYNNNNRTG	2 cut(s)	305, 543
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
SpeI	ACTAGT	1 cut(s)	1112
Sse9I	AATT	8 cut(s)	89, 105, 391, 511, 519, 704, 1013, 1104
SseBI	AGGCCT	1 cut(s)	902
SsiI	CCGC	2 cut(s)	1025, 1028
SspMI	CTAG	4 cut(s)	29, 75, 1077, 1113
StuI	AGGCCT	1 cut(s)	902
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	4 cut(s)	561, 628, 725, 754
TaqI	TCGA	7 cut(s)	633, 729, 759, 818, 888, 1088, 1159
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	8 cut(s)	89, 105, 391, 511, 519, 704, 1013, 1104
TatI	WGTACW	1 cut(s)	379
TauI	GCSGC	2 cut(s)	1027, 1030
TfiI	GAWTC	2 cut(s)	657, 1156
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	17, 451
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	3 cut(s)	37, 245, 718
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	8 cut(s)	101, 290, 335, 366, 448, 581, 874, 1155
TspRI	CASTG	2 cut(s)	17, 451
Tth111I	GACNNNGTC	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	685
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XhoI	CTCGAG	1 cut(s)	1087
XmnI	GAANNNNTTC	2 cut(s)	402, 1105
XspI	CTAG	4 cut(s)	29, 75, 1077, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.