Rmu_sc0000393.1_g000015

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000393.1
Physical Location & Seq
Forward (+)
61291 .. 61548
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000393.1_g000015.1.cds

Sequence Viewer

Length: 258 bp
atgtttctgaggcgacatattgatcctagcttacgctgggaataccttcagttaaagacacccaaagaattgtgggatgcccttaagggacgttttgggaacattcatgacactttactcccaaaattggctattcaatggaatggaatccgcttgcttgactataaaaatgtcaatgacttcaacaaggacatgttgcgcttaaaggcacgtctcaatttctgtggaagggaaatcacagaagatgatatgatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

10.27

Weight (kDa)

9.25

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025456)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 127
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 2 cut(s) 137, 184
AjiI CACGTC 1 cut(s) 212
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 212
BmsI GCATC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 22, 252
BspACI CCGC 1 cut(s) 151
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 83
BssMI GATC 2 cut(s) 22, 252
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 25, 255
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 22, 252
BstNSI RCATGY 1 cut(s) 196
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 107, 193
CviJI RGCY 2 cut(s) 30, 131
CviKI_1 RGCY 2 cut(s) 30, 131
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 24, 254
DpnII GATC 2 cut(s) 22, 252
Eco57I CTGAAG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 110, 196
FaiI YATR 5 cut(s) 18, 108, 165, 194, 251
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 106, 192
FokI GGATG 1 cut(s) 89
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 110, 196
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 56, 222
HpyCH4IV ACGT 2 cut(s) 91, 211
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 91, 211
Hsp92II CATG 2 cut(s) 110, 196
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 22, 252
LpnPI CCDG 1 cut(s) 22
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 27
MaeII ACGT 2 cut(s) 91, 211
MalI GATC 2 cut(s) 24, 254
MboI GATC 2 cut(s) 22, 252
MboII GAAGA 1 cut(s) 254
MluCI AATT 3 cut(s) 68, 125, 217
MnlI CCTC 1 cut(s) 3
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 53, 84, 203
MspCI CTTAAG 1 cut(s) 83
NdeII GATC 2 cut(s) 22, 252
NlaIII CATG 2 cut(s) 110, 196
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 147
PscI ACATGT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 53, 84, 203
Sau3AI GATC 2 cut(s) 22, 252
SetI ASST 4 cut(s) 32, 48, 94, 214
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 8 cut(s) 39, 49, 119, 166, 170, 199, 205, 222
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 68, 125, 217
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 27
TaiI ACGT 2 cut(s) 94, 214
TasI AATT 3 cut(s) 68, 125, 217
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 53, 84, 203
Tru9I TTAA 3 cut(s) 53, 84, 203
TspDTI ATGAA 1 cut(s) 95
Vha464I CTTAAG 1 cut(s) 83
XceI RCATGY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.