Rmu_ssc0000174.1_g000032

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000174.1
Physical Location & Seq
Reverse (-)
161466 .. 161723
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000174.1_g000032.1.cds

Sequence Viewer

Length: 258 bp
atgtttctgaggcgacatattgatcctagcctacgctgggagtaccttcagttgaagacacccaaagaactgtgggatgcccttaagggacgttttgggaacattcatgacaccttgctcccagaactgaccgttcagtggaatgaaatccgcttgcttgtatacaaatggatcaatgactttaacaaggatatgttgcgcctaaaggcacgtctaaatttctgtggaaaggaactcacagaagatgatatgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

10.4

Weight (kDa)

7.89

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025456)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 17, 179
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 37, 138
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 55
AjiI CACGTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 17, 179
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 62
BfaI CTAG 2 cut(s) 27, 256
BfrI CTTAAG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 212
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 138
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 37, 138
BseYI CCCAGC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 37, 138
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 22, 171, 252
BspACI CCGC 1 cut(s) 151
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 2 cut(s) 17, 179
BspTI CTTAAG 1 cut(s) 83
BssMI GATC 3 cut(s) 22, 171, 252
BssNAI GTATAC 1 cut(s) 163
Bst1107I GTATAC 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 72, 133
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 25, 174, 255
BstMBI GATC 3 cut(s) 22, 171, 252
BstV2I GAAGAC 1 cut(s) 62
BstZ17I GTATAC 1 cut(s) 163
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 107
CviJI RGCY 1 cut(s) 30
CviKI_1 RGCY 1 cut(s) 30
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 8
DpnI GATC 3 cut(s) 24, 173, 254
DpnII GATC 3 cut(s) 22, 171, 252
Eco57I CTGAAG 1 cut(s) 32
FaeI CATG 1 cut(s) 110
FaiI YATR 5 cut(s) 18, 108, 163, 194, 251
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 89
FspBI CTAG 2 cut(s) 27, 256
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 72, 133
HpyCH4IV ACGT 2 cut(s) 91, 211
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 91, 211
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 22, 171, 252
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 2 cut(s) 22, 135
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 27, 256
MaeII ACGT 2 cut(s) 91, 211
MalI GATC 3 cut(s) 24, 173, 254
MboI GATC 3 cut(s) 22, 171, 252
MboII GAAGA 2 cut(s) 67, 254
MluCI AATT 1 cut(s) 217
MnlI CCTC 1 cut(s) 3
MseI TTAA 2 cut(s) 84, 183
MspCI CTTAAG 1 cut(s) 83
NdeII GATC 3 cut(s) 22, 171, 252
NlaIII CATG 1 cut(s) 110
PagI TCATGA 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 84, 183
Sau3AI GATC 3 cut(s) 22, 171, 252
SetI ASST 4 cut(s) 48, 94, 116, 214
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 9 cut(s) 39, 49, 119, 127, 134, 166, 170, 199, 222
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 27, 256
TaaI ACNGT 2 cut(s) 72, 133
TaiI ACGT 2 cut(s) 94, 214
TasI AATT 1 cut(s) 217
Tru1I TTAA 2 cut(s) 84, 183
Tru9I TTAA 2 cut(s) 84, 183
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 95, 159
TspRI CASTG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 27, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.