Rmu_sc0000395.1_g000019

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000395.1
OG0030843
Physical Location & Seq
Forward (+)
76033 .. 76925
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000395.1_g000019.1.cds

Sequence Viewer

Length: 747 bp
atgggatctggagctcggcccacacagatactcctaccaagaactgaaaaaagccacaaaagggttctgaggaaaagagctcctcagcgaaggcgggttcggccaagtgttcaaaggaacactccccaattccaaaacactagtagccgtcaaccgaatctcgaacaactcgaaacagggcctaagggaattcgtggcggaaatcgcaagcatagaggtttgggaattgggattataaaggggattccttctgcgcttcattatctacacgaagggtttgagcaggttgtggtttacagagatgtcaaggccagcaatgtgttgctggatagtgaaatgaatgggaggcttgggcattttgggttggcgaggctgcatgaacacgggtcgaactcgaatacgactcgggtcgtgggtacgctcgggtatttggctccggagttgccgagaaccgggaaggcgagtacgggttcggatgtgtatgcgtttggcgcgcttttgctggaggtggtatgcgggcggaggcccattgagcccaacgcggagcccggggagttggttttggtagactgggtttggaataggtataaagagggaaaggtacttgaggtggtggatcccaggcttgatggggtttatgatgagcgggaggtggtgatggtggtgaagttggggttgatgtgctcggcccacgggccgtgggccaggcctaatatgaggctggtggtgaggtatttggatgggtag

Protein Analysis

248

Amino Acids

27.68

Weight (kDa)

10.17

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030843)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024628
rosa_multiflora Rmu_sc0000395.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 646
AccI GTMKAC 1 cut(s) 567
AccII CGCG 2 cut(s) 494, 542
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 6 cut(s) 94, 198, 516, 520, 542, 646
AclWI GGATC 3 cut(s) 13, 611, 624
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 3 cut(s) 418, 466, 603
AfiI CCNNNNNNNGG 2 cut(s) 61, 452
AgsI TTSAA 1 cut(s) 113
AhlI ACTAGT 1 cut(s) 140
AjnI CCWGG 2 cut(s) 620, 704
AluBI AGCT 2 cut(s) 14, 80
AluI AGCT 2 cut(s) 14, 80
Alw21I GWGCWC 3 cut(s) 16, 82, 686
AlwI GGATC 3 cut(s) 13, 611, 624
Ama87I CYCGRG 3 cut(s) 405, 422, 548
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 9 cut(s) 17, 101, 179, 309, 524, 687, 695, 702, 707
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 189
AspLEI GCGC 3 cut(s) 256, 494, 496
AspS9I GGNCC 6 cut(s) 18, 179, 525, 688, 695, 702
AsuC2I CCSGG 3 cut(s) 454, 549, 550
AsuHPI GGTGA 3 cut(s) 667, 676, 739
AvaI CYCGRG 3 cut(s) 405, 422, 548
AxyI CCTNAGG 1 cut(s) 183
BamHI GGATCC 1 cut(s) 616
BanII GRGCYC 4 cut(s) 16, 82, 537, 549
Bbv12I GWGCWC 3 cut(s) 16, 82, 686
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 360
BccI CCATC 3 cut(s) 623, 652, 734
BceAI ACGGC 2 cut(s) 132, 682
BciT130I CCWGG 2 cut(s) 622, 706
BcnI CCSGG 3 cut(s) 454, 549, 550
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 5 cut(s) 454, 549, 550, 622, 706
BmeT110I CYCGRG 3 cut(s) 405, 422, 548
BmgT120I GGNCC 6 cut(s) 18, 179, 525, 688, 695, 702
BmiI GGNNCC 3 cut(s) 435, 546, 618
BmrFI CCNGG 5 cut(s) 454, 549, 550, 622, 706
BmrI ACTGGG 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 580
BoxI GACNNNNGTC 1 cut(s) 407
BpmI CTGGAG 2 cut(s) 30, 524
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 3 cut(s) 454, 549, 550
BsaJI CCNNGG 5 cut(s) 548, 549, 620, 691, 698
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 452
Bse1I ACTGG 1 cut(s) 575
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 322
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 622, 706
BseDI CCNNGG 5 cut(s) 548, 549, 620, 691, 698
BseGI GGATG 2 cut(s) 481, 745
BseLI CCNNNNNNNGG 2 cut(s) 61, 452
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 59, 98
BseNI ACTGG 1 cut(s) 575
BsePI GCGCGC 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 494, 542
BshFI GGCC 9 cut(s) 19, 103, 181, 311, 526, 689, 697, 704, 709
BsiHKAI GWGCWC 3 cut(s) 16, 82, 686
BsiHKCI CYCGRG 3 cut(s) 405, 422, 548
BsiSI CCGG 3 cut(s) 437, 453, 549
BslI CCNNNNNNNGG 2 cut(s) 61, 452
BsnI GGCC 9 cut(s) 19, 103, 181, 311, 526, 689, 697, 704, 709
BsoBI CYCGRG 3 cut(s) 405, 422, 548
Bsp1286I GDGCHC 5 cut(s) 16, 82, 537, 549, 686
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 2 cut(s) 5, 616
BspACI CCGC 6 cut(s) 94, 198, 516, 520, 542, 646
BspANI GGCC 9 cut(s) 19, 103, 181, 311, 526, 689, 697, 704, 709
BspCNI CTCAG 2 cut(s) 60, 97
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 2 cut(s) 494, 542
BspLI GGNNCC 3 cut(s) 435, 546, 618
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 3 cut(s) 13, 611, 624
BsrBI CCGCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 5 cut(s) 548, 549, 620, 691, 698
BssHII GCGCGC 1 cut(s) 492
BssMI GATC 2 cut(s) 5, 616
Bst2UI CCWGG 2 cut(s) 622, 706
BstC8I GCNNGC 4 cut(s) 209, 313, 494, 518
BstDEI CTNAG 3 cut(s) 68, 84, 183
BstDSI CCRYGG 2 cut(s) 691, 698
BstF5I GGATG 2 cut(s) 481, 745
BstFNI CGCG 2 cut(s) 494, 542
BstHHI GCGC 3 cut(s) 256, 494, 496
BstKTI GATC 2 cut(s) 8, 619
BstMBI GATC 2 cut(s) 5, 616
BstMWI GCNNNNNNNGC 4 cut(s) 100, 204, 491, 532
BstNI CCWGG 2 cut(s) 622, 706
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 5 cut(s) 452, 547, 548, 620, 704
BstUI CGCG 2 cut(s) 494, 542
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 5, 616
BstYI RGATCY 2 cut(s) 5, 616
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 9 cut(s) 19, 103, 181, 311, 526, 689, 697, 704, 709
BtgI CCRYGG 2 cut(s) 691, 698
BtsCI GGATG 2 cut(s) 481, 745
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 4 cut(s) 209, 313, 494, 518
CfoI GCGC 3 cut(s) 256, 494, 496
Cfr13I GGNCC 6 cut(s) 18, 179, 525, 688, 695, 702
Cfr9I CCCGGG 1 cut(s) 548
Csp6I GTAC 3 cut(s) 417, 465, 602
CviAII CATG 1 cut(s) 377
CviQI GTAC 3 cut(s) 417, 465, 602
DdeI CTNAG 3 cut(s) 68, 84, 183
DpnI GATC 2 cut(s) 7, 618
DpnII GATC 2 cut(s) 5, 616
EaeI YGGCCR 1 cut(s) 101
EciI GGCGGA 2 cut(s) 213, 535
Ecl136II GAGCTC 2 cut(s) 14, 80
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 4 cut(s) 16, 82, 537, 549
Eco53kI GAGCTC 2 cut(s) 14, 80
Eco81I CCTNAGG 1 cut(s) 183
Eco88I CYCGRG 3 cut(s) 405, 422, 548
EcoICRI GAGCTC 2 cut(s) 14, 80
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 620, 704
EcoT38I GRGCYC 4 cut(s) 16, 82, 537, 549
FaeI CATG 1 cut(s) 380
FaiI YATR 8 cut(s) 213, 236, 378, 483, 514, 588, 639, 716
FatI CATG 1 cut(s) 376
FauI CCCGC 3 cut(s) 87, 509, 639
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 4 cut(s) 16, 82, 537, 549
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 1 cut(s) 141
GlaI GCGC 3 cut(s) 255, 493, 495
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 2 cut(s) 30, 524
HaeIII GGCC 9 cut(s) 19, 103, 181, 311, 526, 689, 697, 704, 709
HapII CCGG 3 cut(s) 437, 453, 549
HhaI GCGC 3 cut(s) 256, 494, 496
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 3 cut(s) 254, 492, 494
HinP1I GCGC 3 cut(s) 254, 492, 494
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 3 cut(s) 157, 244, 403
HpaII CCGG 3 cut(s) 437, 453, 549
HphI GGTGA 3 cut(s) 667, 676, 739
Hpy166II GTNNAC 3 cut(s) 152, 295, 568
Hpy188I TCNGA 2 cut(s) 69, 475
Hpy188III TCNNGA 3 cut(s) 9, 161, 437
Hpy8I GTNNAC 3 cut(s) 152, 295, 568
HpyAV CCTTC 4 cut(s) 84, 258, 266, 451
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 204, 491, 532
HpyF3I CTNAG 3 cut(s) 68, 84, 183
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 3 cut(s) 254, 492, 494
Kpn2I TCCGGA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 5, 616
LmnI GCTCC 4 cut(s) 11, 85, 439, 544
Lsp1109I GCAGC 1 cut(s) 360
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 7, 618
MbiI CCGCTC 1 cut(s) 646
MboI GATC 2 cut(s) 5, 616
MflI RGATCY 2 cut(s) 5, 616
MhlI GDGCHC 5 cut(s) 16, 82, 537, 549, 686
MluCI AATT 3 cut(s) 128, 189, 225
MlyI GAGTC 1 cut(s) 397
MroI TCCGGA 1 cut(s) 436
MspI CCGG 3 cut(s) 437, 453, 549
MspR9I CCNGG 5 cut(s) 454, 549, 550, 622, 706
MvaI CCWGG 2 cut(s) 622, 706
MvnI CGCG 2 cut(s) 494, 542
MwoI GCNNNNNNNGC 4 cut(s) 100, 204, 491, 532
NciI CCSGG 3 cut(s) 454, 549, 550
NdeII GATC 2 cut(s) 5, 616
NlaIII CATG 1 cut(s) 380
NlaIV GGNNCC 3 cut(s) 435, 546, 618
NmeAIII GCCGAG 2 cut(s) 471, 665
PauI GCGCGC 1 cut(s) 492
PceI AGGCCT 1 cut(s) 709
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 2 cut(s) 157, 244
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 407
PsiI TTATAA 1 cut(s) 236
Psp124BI GAGCTC 2 cut(s) 16, 82
Psp6I CCWGG 2 cut(s) 620, 704
PspGI CCWGG 2 cut(s) 620, 704
PspN4I GGNNCC 3 cut(s) 435, 546, 618
PspPI GGNCC 6 cut(s) 18, 179, 525, 688, 695, 702
PsuI RGATCY 2 cut(s) 5, 616
PteI GCGCGC 1 cut(s) 492
RsaI GTAC 3 cut(s) 418, 466, 603
RsaNI GTAC 3 cut(s) 417, 465, 602
SacI GAGCTC 2 cut(s) 16, 82
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 2 cut(s) 5, 616
Sau96I GGNCC 6 cut(s) 18, 179, 525, 688, 695, 702
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 5 cut(s) 454, 549, 550, 622, 706
SduI GDGCHC 5 cut(s) 16, 82, 537, 549, 686
SmaI CCCGGG 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 128, 189, 225
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 6 cut(s) 94, 198, 516, 520, 542, 646
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 2 cut(s) 16, 82
StuI AGGCCT 1 cut(s) 709
StyD4I CCNGG 5 cut(s) 452, 547, 548, 620, 704
TaqI TCGA 4 cut(s) 162, 171, 389, 395
TasI AATT 3 cut(s) 128, 189, 225
TfiI GAWTC 2 cut(s) 157, 244
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 248, 353, 393
TspMI CCCGGG 1 cut(s) 548
XapI RAATTY 1 cut(s) 189
XmaI CCCGGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.