Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000400.1

Orthogroup ID

OG0031070

Physical Location & Seq

Genomic Coordinates Forward (+)

143875 .. 145034

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000400.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttagggactaaactgtcgacgcgcccaaatcacttggtcaccgtcgagatcagcagccccggcgccgattggaccgtcggcaaagaccgcacccggagcgcccgccagctctcctggctccggaacttaaaactccaacaaatcgccgcctccgtcaccaattccttcgtcggcctcgtccgcacatccaaccgtagcatcgcctcgcccgattcgccggccaactccgcctcgtcgcggctctaccgatccgccgacggtggggttcgccgaggtcatcagaatcgtatatgcgaattggctccacgtcagagtcaattacagtcggtggaccgcgtcattctggtgctcggatgcttctggatcaagttccggcgagtcaagcccaaggccgccatggagtacaaaacgacaccgtctagtgaggaggagggtgggactgagaatgtggaggattatcccatggtgttgttgcagatccctatgtgcaatgagagggaggtaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0009856 GO:0012505 GO:0022414 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

170

Amino Acids

19.01

Weight (kDa)

10.01

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031070)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000400.1_g000030 Rmu_sc0031517.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	3 cut(s)	25, 241, 339
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	9 cut(s)	91, 106, 150, 184, 231, 241, 255, 337, 396
AclWI	GGATC	3 cut(s)	246, 374, 475
AcoI	YGGCCR	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	123, 240, 264
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	3 cut(s)	246, 374, 475
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	3 cut(s)	175, 222, 393
ApeKI	GCWGC	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	27, 68, 104
AspS9I	GGNCC	2 cut(s)	75, 334
AsuC2I	CCSGG	2 cut(s)	63, 97
AsuHPI	GGTGA	2 cut(s)	34, 151
AvaII	GGWCC	2 cut(s)	75, 334
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	63, 97
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	2 cut(s)	69, 105
BisI	GCNGC	4 cut(s)	58, 150, 242, 396
BlsI	GCNGC	4 cut(s)	59, 151, 243, 397
Bme1390I	CCNGG	3 cut(s)	63, 97, 118
Bme18I	GGWCC	2 cut(s)	75, 334
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	75, 334
BmiI	GGNNCC	3 cut(s)	67, 122, 306
BmrFI	CCNGG	3 cut(s)	63, 97, 118
BmsI	GCATC	2 cut(s)	210, 347
BpuMI	CCSGG	2 cut(s)	63, 97
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	61, 274, 390, 399, 465
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 240, 264
Bse118I	RCCGGY	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	5 cut(s)	61, 274, 390, 399, 465
BseGI	GGATG	2 cut(s)	188, 362
BseLI	CCNNNNNNNGG	3 cut(s)	123, 240, 264
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	2 cut(s)	443, 446
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	25, 241, 339
BshFI	GGCC	3 cut(s)	177, 224, 395
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	63, 97, 124, 221, 376
BslFI	GGGAC	2 cut(s)	22, 454
BslI	CCNNNNNNNGG	3 cut(s)	123, 240, 264
BsmFI	GGGAC	2 cut(s)	22, 454
BsnI	GGCC	3 cut(s)	177, 224, 395
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	51, 251, 366, 480
Bsp19I	CCATGG	2 cut(s)	399, 465
BspACI	CCGC	9 cut(s)	91, 106, 150, 184, 231, 241, 255, 337, 396
BspANI	GGCC	3 cut(s)	177, 224, 395
BspCNI	CTCAG	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	123
BspFNI	CGCG	3 cut(s)	25, 241, 339
BspLI	GGNNCC	3 cut(s)	67, 122, 306
BspPI	GGATC	3 cut(s)	246, 374, 475
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	5 cut(s)	61, 274, 390, 399, 465
BssMI	GATC	4 cut(s)	51, 251, 366, 480
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	390, 399, 465
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	7 cut(s)	18, 46, 79, 197, 263, 327, 420
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	106, 110, 222
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	2 cut(s)	399, 465
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	188, 362
BstFNI	CGCG	3 cut(s)	25, 241, 339
BstH2I	RGCGCY	2 cut(s)	69, 105
BstHHI	GCGC	3 cut(s)	27, 68, 104
BstKTI	GATC	4 cut(s)	54, 254, 369, 483
BstMBI	GATC	4 cut(s)	51, 251, 366, 480
BstMWI	GCNNNNNNNGC	8 cut(s)	63, 90, 99, 118, 183, 217, 230, 385
BstNI	CCWGG	1 cut(s)	118
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	3 cut(s)	61, 95, 116
BstUI	CGCG	3 cut(s)	25, 241, 339
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	177, 224, 395
BtgI	CCRYGG	2 cut(s)	399, 465
BtgZI	GCGATG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	188, 362
Cac8I	GCNNGC	3 cut(s)	106, 110, 222
CfoI	GCGC	3 cut(s)	27, 68, 104
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	75, 334
CseI	GACGC	2 cut(s)	31, 328
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	400, 466
CviJI	RGCY	9 cut(s)	60, 112, 121, 177, 224, 244, 305, 388, 395
CviKI_1	RGCY	9 cut(s)	60, 112, 121, 177, 224, 244, 305, 388, 395
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	444
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	4 cut(s)	53, 253, 368, 482
DpnII	GATC	4 cut(s)	51, 251, 366, 480
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	2 cut(s)	220, 244
Eco130I	CCWWGG	3 cut(s)	390, 399, 465
Eco47I	GGWCC	2 cut(s)	75, 334
Eco91I	GGTNACC	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	3 cut(s)	390, 399, 465
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	3 cut(s)	390, 399, 465
FaeI	CATG	2 cut(s)	403, 469
FaiI	YATR	5 cut(s)	293, 295, 401, 467, 488
FaqI	GGGAC	2 cut(s)	22, 454
FatI	CATG	2 cut(s)	399, 465
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	4 cut(s)	58, 150, 242, 396
FokI	GGATG	2 cut(s)	175, 369
Fsp4HI	GCNGC	4 cut(s)	58, 150, 242, 396
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	3 cut(s)	26, 67, 103
GluI	GCNGC	4 cut(s)	58, 150, 242, 396
HaeII	RGCGCY	2 cut(s)	69, 105
HaeIII	GGCC	3 cut(s)	177, 224, 395
HapII	CCGG	5 cut(s)	63, 97, 124, 221, 376
HgaI	GACGC	2 cut(s)	31, 328
HhaI	GCGC	3 cut(s)	27, 68, 104
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	403, 469
Hin6I	GCGC	3 cut(s)	25, 66, 102
HinP1I	GCGC	3 cut(s)	25, 66, 102
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	215, 286, 316, 381
HpaII	CCGG	5 cut(s)	63, 97, 124, 221, 376
HphI	GGTGA	2 cut(s)	34, 151
Hpy166II	GTNNAC	2 cut(s)	21, 334
Hpy188I	TCNGA	3 cut(s)	285, 315, 356
Hpy188III	TCNNGA	3 cut(s)	49, 124, 364
Hpy8I	GTNNAC	2 cut(s)	21, 334
Hpy99I	CGWCG	6 cut(s)	25, 50, 83, 176, 241, 263
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	7 cut(s)	18, 46, 79, 197, 263, 327, 420
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	478, 492
HpyF10VI	GCNNNNNNNGC	8 cut(s)	63, 90, 99, 118, 183, 217, 230, 385
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	310
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	403, 469
HspAI	GCGC	3 cut(s)	25, 66, 102
KasI	GGCGCC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	51, 251, 366, 480
LmnI	GCTCC	3 cut(s)	99, 126, 310
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	2 cut(s)	210, 347
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	40, 157
MalI	GATC	4 cut(s)	53, 253, 368, 482
MboI	GATC	4 cut(s)	51, 251, 366, 480
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	163, 299, 320
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	325, 390
MmeI	TCCRAC	2 cut(s)	163, 216
MroI	TCCGGA	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	220
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	5 cut(s)	63, 97, 124, 221, 376
MspR9I	CCNGG	3 cut(s)	63, 97, 118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	3 cut(s)	25, 241, 339
MwoI	GCNNNNNNNGC	8 cut(s)	63, 90, 99, 118, 183, 217, 230, 385
NaeI	GCCGGC	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	63, 97
NcoI	CCATGG	2 cut(s)	399, 465
NdeII	GATC	4 cut(s)	51, 251, 366, 480
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	403, 469
NlaIV	GGNNCC	3 cut(s)	67, 122, 306
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	2 cut(s)	40, 157
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 177, 210
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	215, 286
PflFI	GACNNNGTC	2 cut(s)	338, 418
PkrI	GCNGC	4 cut(s)	59, 151, 243, 397
PleI	GAGTC	2 cut(s)	324, 389
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	2 cut(s)	324, 389
Psp6I	CCWGG	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	67, 122, 306
PspPI	GGNCC	2 cut(s)	75, 334
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	2 cut(s)	338, 418
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	4 cut(s)	58, 150, 242, 396
Sau3AI	GATC	4 cut(s)	51, 251, 366, 480
Sau96I	GGNCC	2 cut(s)	75, 334
SchI	GAGTC	2 cut(s)	325, 390
ScrFI	CCNGG	3 cut(s)	63, 97, 118
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	4 cut(s)	114, 280, 313, 507
SfaNI	GCATC	2 cut(s)	210, 347
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	75, 334
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	163, 299, 320
SsiI	CCGC	9 cut(s)	91, 106, 150, 184, 231, 241, 255, 337, 396
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	61, 95, 116
StyI	CCWWGG	3 cut(s)	390, 399, 465
TaaI	ACNGT	7 cut(s)	18, 46, 79, 197, 263, 327, 420
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	20, 48
TasI	AATT	3 cut(s)	163, 299, 320
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	3 cut(s)	152, 244, 398
TfiI	GAWTC	2 cut(s)	215, 286
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	40, 157
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	2 cut(s)	40, 157
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	2 cut(s)	338, 418
VpaK11BI	GGWCC	2 cut(s)	75, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.