Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031517.1

Orthogroup ID

OG0031070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 767

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

tcacttggtcaccgtcgagatcagcagccccagagctgatcggactgtcggcaaaaaccgcacccggagctcccgccagctctcctggctatggctcttaaatctccaacaaatcaccgcctccttcgcctccgtcaccaattccttcgtcagcctcgtccgtacccccaaccgccgcatcgcctcccccgatttgccggccgactccgcctcgtcgcggctctaccgatccgccgacggtggggtccgccgaggtcatcggaatcgtatatgcgaattggctccacgtcagagtcaattacagtcggtggaccgcatcattctggtgctcggatgcttctggatcaagttccggcgagtcaatcccaaggccgccatggagtacaaaacgacgccgtccagtgaggaggagggtgggactgagaatgtggaggattatcccatggtgttgttgcaaatccctatgtgcaatgagagggaggtaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0009856 GO:0012505 GO:0022414 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

10.11

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031070)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000400.1_g000030 Rmu_sc0031517.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	2 cut(s)	223, 351
AcoI	YGGCCR	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	2 cut(s)	164, 384
AfiI	CCNNNNNNNGG	3 cut(s)	91, 217, 241
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	36, 70, 80
AluI	AGCT	3 cut(s)	36, 70, 80
Alw21I	GWGCWC	2 cut(s)	72, 331
AlwI	GGATC	2 cut(s)	223, 351
AoxI	GGCC	2 cut(s)	199, 370
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	245, 311
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	107, 128
AvaII	GGWCC	2 cut(s)	245, 311
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	72, 331
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	65
BisI	GCNGC	4 cut(s)	26, 176, 219, 373
BlsI	GCNGC	4 cut(s)	27, 177, 220, 374
Bme1390I	CCNGG	2 cut(s)	65, 86
Bme18I	GGWCC	2 cut(s)	245, 311
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	245, 311
BmiI	GGNNCC	2 cut(s)	246, 283
BmrFI	CCNGG	2 cut(s)	65, 86
BmsI	GCATC	3 cut(s)	187, 324, 325
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	251, 367, 376, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 217, 241
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	4 cut(s)	251, 367, 376, 442
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	91, 217, 241
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	420, 423
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	201, 372
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	72, 331
BsiSI	CCGG	3 cut(s)	65, 198, 353
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	91, 217, 241
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	201, 372
Bsp1286I	GDGCHC	2 cut(s)	72, 331
Bsp143I	GATC	4 cut(s)	19, 38, 228, 343
Bsp19I	CCATGG	2 cut(s)	376, 442
BspANI	GGCC	2 cut(s)	201, 372
BspCNI	CTCAG	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	246, 283
BspPI	GGATC	2 cut(s)	223, 351
BsrDI	GCAATG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	251, 367, 376, 442
BssMI	GATC	4 cut(s)	19, 38, 228, 343
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	3 cut(s)	367, 376, 442
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	4 cut(s)	14, 47, 240, 304
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	78, 199
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	2 cut(s)	376, 442
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	4 cut(s)	22, 41, 231, 346
BstMBI	GATC	4 cut(s)	19, 38, 228, 343
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 67, 86, 126, 207
BstNI	CCWGG	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	63, 84
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	37
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	201, 372
BtgI	CCRYGG	2 cut(s)	376, 442
BtgZI	GCGATG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	78, 199
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	245, 311
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	163, 383
CviAII	CATG	2 cut(s)	377, 443
CviQI	GTAC	2 cut(s)	163, 383
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	4 cut(s)	21, 40, 230, 345
DpnII	GATC	4 cut(s)	19, 38, 228, 343
DrdI	GACNNNNNNGTC	1 cut(s)	243
DseDI	GACNNNNNNGTC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
EciI	GGCGGA	3 cut(s)	197, 221, 237
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	3 cut(s)	367, 376, 442
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	245, 311
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	3 cut(s)	367, 376, 442
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	3 cut(s)	367, 376, 442
FaeI	CATG	2 cut(s)	380, 446
FaiI	YATR	6 cut(s)	92, 270, 272, 378, 444, 465
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	376, 442
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	26, 176, 219, 373
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	26, 176, 219, 373
GluI	GCNGC	4 cut(s)	26, 176, 219, 373
HaeIII	GGCC	2 cut(s)	201, 372
HapII	CCGG	3 cut(s)	65, 198, 353
HgaI	GACGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	380, 446
HinfI	GANTC	4 cut(s)	204, 263, 293, 358
HpaII	CCGG	3 cut(s)	65, 198, 353
HphI	GGTGA	2 cut(s)	107, 128
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	4 cut(s)	43, 262, 292, 333
Hpy188III	TCNNGA	2 cut(s)	17, 341
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	4 cut(s)	18, 218, 240, 395
HpyAV	CCTTC	2 cut(s)	134, 155
HpyCH4III	ACNGT	4 cut(s)	14, 47, 240, 304
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	455, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 67, 86, 126, 207
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	380, 446
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	19, 38, 228, 343
LmnI	GCTCC	3 cut(s)	67, 75, 287
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	3 cut(s)	187, 324, 325
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	8, 134
MalI	GATC	4 cut(s)	21, 40, 230, 345
MboI	GATC	4 cut(s)	19, 38, 228, 343
MhlI	GDGCHC	2 cut(s)	72, 331
MluCI	AATT	3 cut(s)	140, 276, 297
MlyI	GAGTC	3 cut(s)	198, 302, 367
MmeI	TCCRAC	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	3 cut(s)	65, 198, 353
MspR9I	CCNGG	2 cut(s)	65, 86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	58, 67, 86, 126, 207
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	2 cut(s)	376, 442
NdeII	GATC	4 cut(s)	19, 38, 228, 343
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	380, 446
NlaIV	GGNNCC	2 cut(s)	246, 283
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	8, 134
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 187
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	263
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	27, 177, 220, 374
PleI	GAGTC	3 cut(s)	198, 301, 366
PpsI	GAGTC	3 cut(s)	198, 301, 366
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	246, 283
PspPI	GGNCC	2 cut(s)	245, 311
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	2 cut(s)	164, 384
RsaNI	GTAC	2 cut(s)	163, 383
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	26, 176, 219, 373
Sau3AI	GATC	4 cut(s)	19, 38, 228, 343
Sau96I	GGNCC	2 cut(s)	245, 311
SchI	GAGTC	3 cut(s)	198, 302, 367
ScrFI	CCNGG	2 cut(s)	65, 86
SduI	GDGCHC	2 cut(s)	72, 331
SetI	ASST	6 cut(s)	38, 72, 82, 257, 290, 484
SfaNI	GCATC	3 cut(s)	187, 324, 325
SinI	GGWCC	2 cut(s)	245, 311
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	3 cut(s)	140, 276, 297
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	63, 84
StyI	CCWWGG	3 cut(s)	367, 376, 442
TaaI	ACNGT	4 cut(s)	14, 47, 240, 304
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	140, 276, 297
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	3 cut(s)	178, 221, 375
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	407
TseFI	GTSAC	2 cut(s)	8, 134
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	2 cut(s)	8, 134
TspGWI	ACGGA	2 cut(s)	122, 150
TspRI	CASTG	1 cut(s)	407
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	245, 311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.