Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000429.1

Orthogroup ID

OG0025479

Physical Location & Seq

Genomic Coordinates Forward (+)

222845 .. 223243

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ctggtcttcgacctttcttcttctgctgcgtttaattctgcaattcaggcctcggtgacccagacggtgttcgatcaaaagctagtggccattttcggagtttccaaggttttgttgcccaaagagatttttgggagcaccctggcatccaggcccgggacgccagtttccggttggcctgagacgccggacagtgctccctcaccggacaattcgatgagtgggcaggaactctcttcgccgcccggttttaaggagataaaatccgagggtgctgccattactaggctgtggaggttgggggttgcttcatgttgtatagcattgtataaaacccaaaatgcaagaaattgcgcagattttctgggaatagagcgagagaaggaaattgggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

132

Amino Acids

14.02

Weight (kDa)

5.41

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025479)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000334.1_g000020 Rmu_sc0000429.1_g000053 Rmu_sc0016872.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	397
Acc16I	TGCGCA	1 cut(s)	355
AciI	CCGC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	87
AcyI	GRCGYC	2 cut(s)	161, 185
AfiI	CCNNNNNNNGG	3 cut(s)	156, 170, 285
AjnI	CCWGG	2 cut(s)	141, 149
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw21I	GWGCWC	2 cut(s)	140, 199
Alw26I	GTCTC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	48, 87, 152, 176
ApeKI	GCWGC	2 cut(s)	26, 275
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	3 cut(s)	156, 157, 246
AsuHPI	GGTGA	2 cut(s)	67, 195
AvaI	CYCGRG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	140, 199
BbvI	GCAGC	2 cut(s)	13, 262
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	143, 151
BcnI	CCSGG	3 cut(s)	156, 157, 246
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	83, 285
BisI	GCNGC	3 cut(s)	27, 242, 276
BlsI	GCNGC	3 cut(s)	28, 243, 277
Bme1390I	CCNGG	5 cut(s)	143, 151, 156, 157, 246
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	5 cut(s)	143, 151, 156, 157, 246
BmsI	GCATC	1 cut(s)	155
BpuMI	CCSGG	3 cut(s)	156, 157, 246
BsaHI	GRCGYC	2 cut(s)	161, 185
BsaJI	CCNNGG	5 cut(s)	51, 105, 141, 155, 267
BsaWI	WCCGGW	2 cut(s)	170, 205
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 170, 285
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	143, 151
BseDI	CCNNGG	5 cut(s)	51, 105, 141, 155, 267
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	156, 170, 285
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	13, 262
BshFI	GGCC	4 cut(s)	50, 89, 154, 178
BsiHKAI	GWGCWC	2 cut(s)	140, 199
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	5 cut(s)	156, 171, 188, 206, 246
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	156, 170, 285
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	50, 89, 154, 178
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	140, 199
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	4 cut(s)	50, 89, 154, 178
BspCNI	CTCAG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	5 cut(s)	51, 105, 141, 155, 267
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	2 cut(s)	161, 185
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	143, 151
Bst4CI	ACNGT	2 cut(s)	67, 194
Bst6I	CTCTTC	1 cut(s)	241
BstACI	GRCGYC	2 cut(s)	161, 185
BstDEI	CTNAG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 160, 184
BstNI	CCWGG	2 cut(s)	143, 151
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	5 cut(s)	141, 149, 154, 155, 244
BstV1I	GCAGC	2 cut(s)	13, 262
BsuRI	GGCC	4 cut(s)	50, 89, 154, 178
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	153
Cfr9I	CCCGGG	1 cut(s)	155
CseI	GACGC	2 cut(s)	169, 193
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	6 cut(s)	50, 82, 89, 154, 178, 289
CviKI_1	RGCY	6 cut(s)	50, 82, 89, 154, 178, 289
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	141, 149
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	315
FaiI	YATR	4 cut(s)	313, 320, 330, 397
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	27, 242, 276
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	27, 242, 276
FspBI	CTAG	2 cut(s)	83, 285
FspI	TGCGCA	1 cut(s)	355
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	3 cut(s)	27, 242, 276
HaeIII	GGCC	4 cut(s)	50, 89, 154, 178
HapII	CCGG	5 cut(s)	156, 171, 188, 206, 246
HgaI	GACGC	2 cut(s)	169, 193
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	2 cut(s)	161, 185
Hin1II	CATG	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HpaII	CCGG	5 cut(s)	156, 171, 188, 206, 246
HphI	GGTGA	2 cut(s)	67, 195
Hpy188I	TCNGA	2 cut(s)	98, 268
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	2 cut(s)	67, 194
HpyCH4V	TGCA	2 cut(s)	41, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 160, 184
HpyF3I	CTNAG	1 cut(s)	180
Hsp92I	GRCGYC	2 cut(s)	161, 185
Hsp92II	CATG	1 cut(s)	315
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	135, 202
Lsp1109I	GCAGC	2 cut(s)	13, 262
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	83, 285
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	9, 12, 228
MhlI	GDGCHC	2 cut(s)	140, 199
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	34, 42, 211, 349, 387
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	4 cut(s)	61, 211, 262, 288
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	33, 252
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	5 cut(s)	156, 171, 188, 206, 246
MspR9I	CCNGG	5 cut(s)	143, 151, 156, 157, 246
MvaI	CCWGG	2 cut(s)	143, 151
MwoI	GCNNNNNNNGC	3 cut(s)	47, 160, 184
NciI	CCSGG	3 cut(s)	156, 157, 246
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	28, 243, 277
PsiI	TTATAA	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	141, 149
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	141, 149
PspPI	GGNCC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	33, 252
SatI	GCNGC	3 cut(s)	27, 242, 276
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	5 cut(s)	143, 151, 156, 157, 246
SduI	GDGCHC	2 cut(s)	140, 199
SetI	ASST	4 cut(s)	15, 84, 111, 299
SfaNI	GCATC	1 cut(s)	155
SmaI	CCCGGG	1 cut(s)	157
Sse9I	AATT	5 cut(s)	34, 42, 211, 349, 387
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	83, 285
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	5 cut(s)	141, 149, 154, 155, 244
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	67, 194
TaqI	TCGA	3 cut(s)	9, 72, 215
TasI	AATT	5 cut(s)	34, 42, 211, 349, 387
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	33, 252
Tru9I	TTAA	2 cut(s)	33, 252
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	26, 275
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	300
TspMI	CCCGGG	1 cut(s)	155
TspRI	CASTG	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmaI	CCCGGG	1 cut(s)	155
XspI	CTAG	2 cut(s)	83, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.