Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0030941

Physical Location & Seq

Genomic Coordinates Forward (+)

8517 .. 8759

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgccgagcgacgacgccttcaacaccttcttctctgagatcggcaccggcaagcatgccccacgcgccatcttcatcgacctcaagcccatcgtcaaagcttttgacctccagcattcctcaacccagaccacgacgagccagacctgcatctcgtcgccgatctgtacaaaccaccggccaccggtcgtgccaaccaccggccaccggtcgtgccaaccaccggtgtcttcatccccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005874 GO:0005881 GO:0012505 GO:0015630 GO:0016020 GO:0019904 GO:0031410 GO:0031982 GO:0032991 GO:0035770 GO:0036464 GO:0043209 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045121 GO:0055037 GO:0097708 GO:0098589 GO:0098805 GO:0098857 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

80

Amino Acids

8.62

Weight (kDa)

7.8

Isoelectric Point (pI)

72.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030941)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032252
rosa_multiflora	Rmu_sc0000469.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	1 cut(s)	66
AcoI	YGGCCR	2 cut(s)	179, 202
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	184, 200, 207, 223
AgeI	ACCGGT	3 cut(s)	184, 207, 223
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	2 cut(s)	179, 202
AsiGI	ACCGGT	3 cut(s)	184, 207, 223
AspLEI	GCGC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	2 cut(s)	77, 98
BfuAI	ACCTGC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	15
BsaWI	WCCGGW	3 cut(s)	184, 207, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 200, 207, 223
Bse118I	RCCGGY	6 cut(s)	47, 177, 184, 200, 207, 223
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	4 cut(s)	184, 200, 207, 223
BseMII	CTCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	2 cut(s)	189, 212
BshFI	GGCC	2 cut(s)	181, 204
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	3 cut(s)	184, 207, 223
BsiEI	CGRYCG	2 cut(s)	189, 212
BsiSI	CCGG	6 cut(s)	48, 178, 185, 201, 208, 224
BslI	CCNNNNNNNGG	4 cut(s)	184, 200, 207, 223
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	181, 204
Bsp1407I	TGTACA	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	39, 162
BspANI	GGCC	2 cut(s)	181, 204
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	44
BsrFI	RCCGGY	6 cut(s)	47, 177, 184, 200, 207, 223
BsrGI	TGTACA	1 cut(s)	167
BssAI	RCCGGY	6 cut(s)	47, 177, 184, 200, 207, 223
BssMI	GATC	2 cut(s)	39, 162
BssNI	GRCGYC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	53, 57
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	42, 165
BstMBI	GATC	2 cut(s)	39, 162
BstMCI	CGRYCG	2 cut(s)	189, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 147
BstNSI	RCATGY	1 cut(s)	59
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	181, 204
BtsCI	GGATG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	53, 57
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	6 cut(s)	47, 177, 184, 200, 207, 223
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	168
CspAI	ACCGGT	3 cut(s)	184, 207, 223
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	5 cut(s)	88, 101, 141, 181, 204
CviKI_1	RGCY	5 cut(s)	88, 101, 141, 181, 204
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	41, 164
DpnII	GATC	2 cut(s)	39, 162
EaeI	YGGCCR	2 cut(s)	179, 202
FaeI	CATG	1 cut(s)	59
FaiI	YATR	1 cut(s)	57
FatI	CATG	1 cut(s)	55
FokI	GGATG	1 cut(s)	220
GlaI	GCGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	181, 204
HapII	CCGG	6 cut(s)	48, 178, 185, 201, 208, 224
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	99
HpaII	CCGG	6 cut(s)	48, 178, 185, 201, 208, 224
Hpy188I	TCNGA	1 cut(s)	37
Hpy99I	CGWCG	4 cut(s)	14, 17, 139, 160
HpyAV	CCTTC	2 cut(s)	28, 37
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 147
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	39, 162
LweI	GCATC	1 cut(s)	159
MalI	GATC	2 cut(s)	41, 164
MboI	GATC	2 cut(s)	39, 162
MboII	GAAGA	3 cut(s)	22, 64, 222
MnlI	CCTC	3 cut(s)	92, 119, 130
MspI	CCGG	6 cut(s)	48, 178, 185, 201, 208, 224
Mva1269I	GAATGC	1 cut(s)	115
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	65, 147
NdeII	GATC	2 cut(s)	39, 162
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	115
PinAI	ACCGGT	3 cut(s)	184, 207, 223
PspN4I	GGNNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	39, 162
SetI	ASST	5 cut(s)	29, 84, 103, 111, 149
SfaNI	GCATC	1 cut(s)	159
SgrAI	CRCCGGYG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	59
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	64, 222
XceI	RCATGY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.