Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000487.1

Orthogroup ID

OG0031073

Physical Location & Seq

Genomic Coordinates Reverse (-)

40968 .. 41534

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000487.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggagaaatcaatacccttaagaggaaatgttaattggatgaaggcacgtgagggactgcttaagtgtactgaacttggtttatcaaaaaatgagttaaagaagctgttaccaattgtggatgccagttcatcctattcaggagcttttgatggtgtccttgagcttctagttcgagctggcagaagcctccctgaagctattatgatgatgattcctgaagcatggcaaaatgacaagaacatggatcctgataggagagcactgtatcacttcaaaaaaaaaattgcaatggcttcaccaatggcaagttctgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

106

Amino Acids

11.84

Weight (kDa)

9.37

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031073)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000487.1_g000010
rosa_samantha	Rh2BG343300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	242, 255
AcuI	CTGAAG	2 cut(s)	216, 240
AcvI	CACGTG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflII	CTTAAG	2 cut(s)	19, 62
AgsI	TTSAA	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	3 cut(s)	19, 51, 295
AluBI	AGCT	5 cut(s)	106, 146, 166, 179, 200
AluI	AGCT	5 cut(s)	106, 146, 166, 179, 200
Alw21I	GWGCWC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	242, 255
AsuHPI	GGTGA	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	247
BbrPI	CACGTG	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	265
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	170
BfrI	CTTAAG	2 cut(s)	19, 62
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	45, 127, 131
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	242, 255
BspTI	CTTAAG	2 cut(s)	19, 62
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	267
BstAFI	CTTAAG	2 cut(s)	19, 62
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	45, 127, 131
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	45, 127, 131
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	2 cut(s)	225, 244
CviJI	RGCY	7 cut(s)	106, 146, 166, 179, 189, 200, 296
CviKI_1	RGCY	7 cut(s)	106, 146, 166, 179, 189, 200, 296
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	216, 240
Eco72I	CACGTG	1 cut(s)	50
FaeI	CATG	2 cut(s)	228, 247
FaiI	YATR	3 cut(s)	206, 226, 245
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	224, 243
FokI	GGATG	3 cut(s)	52, 118, 134
FspBI	CTAG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	228, 247
HinfI	GANTC	1 cut(s)	214
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	141, 218, 251
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	228, 247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	126, 139, 165, 207, 231, 264
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	3 cut(s)	34, 114, 285
MnlI	CCTC	3 cut(s)	17, 46, 200
MseI	TTAA	4 cut(s)	20, 33, 63, 98
MspCI	CTTAAG	2 cut(s)	19, 62
MunI	CAATTG	1 cut(s)	114
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	228, 247
NlaIV	GGNNCC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	20, 33, 63, 98
Sau3AI	GATC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	6 cut(s)	52, 108, 148, 168, 181, 202
SfaNI	GCATC	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	19, 62, 161
SmoI	CTYRAG	3 cut(s)	19, 62, 161
Sse9I	AATT	3 cut(s)	34, 114, 285
SspMI	CTAG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	34, 114, 285
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	4 cut(s)	20, 33, 63, 98
Tru9I	TTAA	4 cut(s)	20, 33, 63, 98
TscAI	CASTG	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	56, 120
TspRI	CASTG	1 cut(s)	270
Vha464I	CTTAAG	2 cut(s)	19, 62
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.