Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0031073

Physical Location & Seq

Genomic Coordinates Reverse (-)

45959131 .. 45960152

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG343300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTGGATTGGATGCATTGGGTGAGTTGGTACGTACATTCTCGATTCTCAACAAATACTTTTCCCAACTGGGACCGTGCTCAGCCCATGTGTGTCATGGCCACAATGGAGAAATCAATACCCTTAAGAGGAAATGTTAACTGGATGAAGGCACGTGAGGGACTGCTTAAGTGTACTGAACTTGGTTTATCAAAAAATGAGTTAAAGAAGCTGTTACCAATTGTGGATGCCAGTTCATCCTGTTCAGGAGCTTTTGATGGTGTCCTTGAGCTTCTAGTTCGAGCTGGCAGAAGCCTCGCTGAAGCTATTATGATGATGATTCCTGAAGCATGGCAAAATGACAAGAACATGGATCCTGATAGGAGAGCACTGTATCACTTCAAAAAAAAAAATTGCAATGGCTTCACCAATGGCAAGTTCTGTGTAGTATTGTTGTTTTCTACTCATGTAGTTGATTCTTACCTTGATAAGGTTTACTCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

161

Amino Acids

18.49

Weight (kDa)

8.83

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	12 - 133	7.4e-41	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0031073)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000487.1_g000010
rosa_samantha	Rh2BG343300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	347, 360
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	321, 345
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	32, 36, 175
AfiI	CCNNNNNNNGG	2 cut(s)	128, 469
AflII	CTTAAG	2 cut(s)	124, 167
AgsI	TTSAA	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	5 cut(s)	211, 251, 271, 284, 305
AluI	AGCT	5 cut(s)	211, 251, 271, 284, 305
Alw21I	GWGCWC	2 cut(s)	82, 370
AlwI	GGATC	2 cut(s)	347, 360
AoxI	GGCC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	34, 397
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	82, 370
BccI	CCATC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	2 cut(s)	124, 167
BlpI	GCTNAGC	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	74, 354
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	3, 217
BmuI	ACTGGG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	2 cut(s)	34, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 469
Bse1I	ACTGG	3 cut(s)	74, 146, 231
Bse3DI	GCAATG	1 cut(s)	403
BseGI	GGATG	4 cut(s)	18, 150, 232, 236
BseLI	CCNNNNNNNGG	2 cut(s)	128, 469
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	3 cut(s)	74, 146, 231
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	82, 370
BslFI	GGGAC	2 cut(s)	86, 174
BslI	CCNNNNNNNGG	2 cut(s)	128, 469
BsmFI	GGGAC	2 cut(s)	86, 174
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	82, 370
Bsp143I	GATC	1 cut(s)	352
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	74, 354
BspPI	GGATC	2 cut(s)	347, 360
BspTI	CTTAAG	2 cut(s)	124, 167
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	3 cut(s)	74, 146, 231
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	77, 372
BstAFI	CTTAAG	2 cut(s)	124, 167
BstBAI	YACGTR	2 cut(s)	34, 155
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	4 cut(s)	18, 150, 232, 236
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstSNI	TACGTA	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	4 cut(s)	18, 150, 232, 236
BtsIMutI	CAGTG	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	31, 35, 174
CviAII	CATG	5 cut(s)	88, 97, 330, 349, 446
CviJI	RGCY	9 cut(s)	85, 101, 211, 251, 271, 284, 294, 305, 402
CviKI_1	RGCY	9 cut(s)	85, 101, 211, 251, 271, 284, 294, 305, 402
CviQI	GTAC	3 cut(s)	31, 35, 174
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	99
Eco105I	TACGTA	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	321, 345
Eco72I	CACGTG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	18
FaeI	CATG	5 cut(s)	91, 100, 333, 352, 449
FaiI	YATR	6 cut(s)	89, 98, 311, 331, 350, 447
FaqI	GGGAC	2 cut(s)	86, 174
FatI	CATG	5 cut(s)	87, 96, 329, 348, 445
FokI	GGATG	4 cut(s)	25, 157, 223, 239
FspBI	CTAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	91, 100, 333, 352, 449
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	45, 319, 455
HpaI	GTTAAC	1 cut(s)	139
HphI	GGTGA	2 cut(s)	34, 397
Hpy166II	GTNNAC	3 cut(s)	139, 174, 475
Hpy188III	TCNNGA	4 cut(s)	42, 246, 323, 356
Hpy8I	GTNNAC	3 cut(s)	139, 174, 475
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	77, 372
HpyCH4IV	ACGT	2 cut(s)	33, 154
HpyCH4V	TGCA	2 cut(s)	16, 396
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	33, 154
Hsp92II	CATG	5 cut(s)	91, 100, 333, 352, 449
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	55, 127, 231, 244, 253, 270, 336, 369
LweI	GCATC	2 cut(s)	3, 217
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	33, 154
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	82, 370
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	219, 391
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	3 cut(s)	122, 151, 305
Mox20I	TGGCCA	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	4 cut(s)	125, 138, 168, 203
Msp20I	TGGCCA	1 cut(s)	101
MspCI	CTTAAG	2 cut(s)	124, 167
MunI	CAATTG	1 cut(s)	219
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	5 cut(s)	91, 100, 333, 352, 449
NlaIV	GGNNCC	2 cut(s)	74, 354
NsiI	ATGCAT	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	45, 319, 455
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	2 cut(s)	34, 155
PspCI	CACGTG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	74, 354
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	32, 36, 175
RsaNI	GTAC	3 cut(s)	31, 35, 174
SaqAI	TTAA	4 cut(s)	125, 138, 168, 203
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	82, 370
SetI	ASST	9 cut(s)	36, 157, 213, 253, 273, 286, 307, 465, 474
SfaNI	GCATC	2 cut(s)	3, 217
SinI	GGWCC	1 cut(s)	73
SmlI	CTYRAG	3 cut(s)	124, 167, 266
SmoI	CTYRAG	3 cut(s)	124, 167, 266
SnaBI	TACGTA	1 cut(s)	34
Sse9I	AATT	2 cut(s)	219, 391
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	77, 372
TaiI	ACGT	2 cut(s)	36, 157
TaqI	TCGA	2 cut(s)	43, 280
TasI	AATT	2 cut(s)	219, 391
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	45, 319, 455
Tru1I	TTAA	4 cut(s)	125, 138, 168, 203
Tru9I	TTAA	4 cut(s)	125, 138, 168, 203
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	2 cut(s)	161, 225
TspRI	CASTG	1 cut(s)	375
Vha464I	CTTAAG	2 cut(s)	124, 167
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.