Rmu_sc0000498.1_g000057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000498.1
OG0030995
Physical Location & Seq
Reverse (-)
216591 .. 217190
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000498.1_g000057.1.cds

Sequence Viewer

Length: 432 bp
atggctctagtgggttcccttaaccaagccattgcctatgagtcaccgactcattcttcaacaggcacgcgatcagagcccaatgctcctcccactacttgggagcttacggtttcatgttctatttcactccccgatgaggggtgcagcactccaccgcttcgcctagtagcacgacgtgtgtattgctctcccacaaccccgttttcactgtttaggctgctcccatttcgctccccgctactacgggaatcgcttttgctttgttttcctctggctactaagatgtttcagttcgataggttgtctcttgcctgcccatggattaagcagcagttcgaaaggttaacctattcgggaatctccggatctacgcttattttcaactccccgaagcatttcgtcgcttactacgcccttccttctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

8.95

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030995)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000099
rosa_multiflora Rmu_sc0000498.1_g000057

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccII CGCG 1 cut(s) 70
AccIII TCCGGA 1 cut(s) 365
AciI CCGC 2 cut(s) 158, 239
AclWI GGATC 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 179
AfiI CCNNNNNNNGG 5 cut(s) 99, 139, 140, 141, 321
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 2 cut(s) 60, 385
AjiI CACGTC 1 cut(s) 179
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 147, 220, 331
Asp700I GAANNNNTTC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 36
AsuII TTCGAA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 3 cut(s) 159, 207, 343
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 8, 167
BisI GCNGC 3 cut(s) 148, 221, 332
BlsI GCNGC 3 cut(s) 149, 222, 333
BmgBI CACGTC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 139, 140, 141, 321
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 5 cut(s) 99, 139, 140, 141, 321
BseMI GCAATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 159, 207, 343
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 5 cut(s) 99, 139, 140, 141, 321
BsmAI GTCTC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 365
Bsp143I GATC 2 cut(s) 71, 368
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 2 cut(s) 158, 239
BspEI TCCGGA 1 cut(s) 365
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 71, 368
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 112, 213
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 68, 316
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 2 cut(s) 74, 371
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 71, 368
BstMWI GCNNNNNNNGC 2 cut(s) 76, 413
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 159, 207, 343
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 320
BtrI CACGTC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 68, 316
CviAII CATG 2 cut(s) 117, 321
CviJI RGCY 6 cut(s) 5, 29, 79, 106, 220, 278
CviKI_1 RGCY 6 cut(s) 5, 29, 79, 106, 220, 278
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 73, 370
DpnII GATC 2 cut(s) 71, 368
DraIII CACNNNGTG 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 120, 324
FaiI YATR 3 cut(s) 39, 118, 322
FatI CATG 2 cut(s) 116, 320
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 148, 221, 332
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 148, 221, 332
FspBI CTAG 2 cut(s) 8, 167
GluI GCNGC 3 cut(s) 148, 221, 332
HapII CCGG 1 cut(s) 366
Hin1II CATG 2 cut(s) 120, 324
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 4 cut(s) 41, 49, 251, 360
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 1 cut(s) 366
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 2 cut(s) 76, 431
Hpy188III TCNNGA 2 cut(s) 357, 366
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 2 cut(s) 180, 407
HpyAV CCTTC 2 cut(s) 428, 432
HpyCH4III ACNGT 2 cut(s) 112, 213
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 413
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 2 cut(s) 120, 324
Kpn2I TCCGGA 1 cut(s) 365
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 2 cut(s) 71, 368
LmnI GCTCC 4 cut(s) 91, 103, 228, 239
LpnPI CCDG 4 cut(s) 48, 260, 328, 379
Lsp1109I GCAGC 3 cut(s) 159, 207, 343
MaeI CTAG 2 cut(s) 8, 167
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 73, 370
MboI GATC 2 cut(s) 71, 368
MboII GAAGA 1 cut(s) 48
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 43, 50
MnlI CCTC 3 cut(s) 99, 133, 282
MroI TCCGGA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 3 cut(s) 21, 327, 347
MspI CCGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 76, 413
NcoI CCATGG 1 cut(s) 320
NdeII GATC 2 cut(s) 71, 368
NlaIII CATG 2 cut(s) 120, 324
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 42
NspV TTCGAA 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 251, 360
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 3 cut(s) 149, 222, 333
PleI GAGTC 2 cut(s) 43, 49
PpsI GAGTC 2 cut(s) 43, 49
PspN4I GGNNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 368
SaqAI TTAA 3 cut(s) 21, 327, 347
SatI GCNGC 3 cut(s) 148, 221, 332
Sau3AI GATC 2 cut(s) 71, 368
SchI GAGTC 2 cut(s) 43, 50
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 108, 181, 305, 347, 353
SfuI TTCGAA 1 cut(s) 339
SsiI CCGC 2 cut(s) 158, 239
SspMI CTAG 2 cut(s) 8, 167
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 112, 213
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 297, 339
TfiI GAWTC 2 cut(s) 251, 360
Tru1I TTAA 3 cut(s) 21, 327, 347
Tru9I TTAA 3 cut(s) 21, 327, 347
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 3 cut(s) 147, 220, 331
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 2 cut(s) 8, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.