Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000499.1

Orthogroup ID

OG0031074

Physical Location & Seq

Genomic Coordinates Forward (+)

67852 .. 70065

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000499.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggcgatgatcaatcttcttctctcttttctctgcattttcaccaccaccgccctttcacaaccaaccagtgctccgccgtactctcaagaacccatcgacgccgccagccgatctctcctcctcctccttcaatctccccaaccccaccactggcttcaatcccacccaagactcctctcgtccctgccctcttcgtcatcggagactcctacagcaccaacaatttcctcgggacattggcacgcaccgacagcctcccctacggctgcgatttcgacacgcacgagcccactgggcggttctgcaatggcagaatcccaatcaattatattgatattaaagattttggaacatggaagtatcagaggtcttagtatcttgtcttttgagcttgaactagttggttacacgattgctttggcatactgtcttcatggagggcttcccttctcagcttatggggaactggcctttcttttgatccaagctctaatattagttgccattatgtactattactcccaacctgtgagcatcaaaagatggatgacggcattactatattgtggtatagcaccaaccatattagcaggtcgaattgatcctgttctatttgaagctctatatgcatcacaacatgcaatttttctctttgccaagatcccgcagatatggcagaacttttctaacaaaagtacaggggagctcagcttcttaacgaactttatgaactttggaggttctatgggtacgttcaaattgttaaaagggctgtatgctgtaatgtgtaagatatgtattccggggaacttacagatatttaacttccttttgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

280

Amino Acids

30.51

Weight (kDa)

8.27

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031074)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000499.1_g000011
rosa_samantha	Rh1CG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AciI	CCGC	5 cut(s)	51, 77, 105, 300, 668
AclWI	GGATC	3 cut(s)	478, 599, 658
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	83, 515, 700, 754
AfiI	CCNNNNNNNGG	2 cut(s)	153, 299
AgsI	TTSAA	5 cut(s)	134, 161, 398, 620, 760
AhlI	ACTAGT	1 cut(s)	400
AluBI	AGCT	6 cut(s)	394, 458, 491, 623, 709, 714
AluI	AGCT	6 cut(s)	394, 458, 491, 623, 709, 714
Alw21I	GWGCWC	2 cut(s)	76, 711
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	478, 599, 658
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	293, 711
BauI	CACGAG	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	76, 711
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	104, 540
BceAI	ACGGC	3 cut(s)	64, 282, 570
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	2 cut(s)	105, 270
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	2 cut(s)	106, 271
Bme1390I	CCNGG	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	807
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	546, 641
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	231, 806
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 299
Bse1I	ACTGG	4 cut(s)	69, 158, 300, 474
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	231, 806
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	153, 299
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	468, 724
BseNI	ACTGG	4 cut(s)	69, 158, 300, 474
BseRI	GAGGAG	4 cut(s)	110, 113, 116, 167
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	473
BsiHKAI	GWGCWC	2 cut(s)	76, 711
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	169, 249
BslI	CCNNNNNNNGG	2 cut(s)	153, 299
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	169, 249
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	76, 293, 711
Bsp143I	GATC	5 cut(s)	9, 113, 483, 604, 663
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	5 cut(s)	51, 77, 105, 300, 668
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	467, 723
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	3 cut(s)	478, 599, 658
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	69, 158, 300, 474
BssECI	CCNNGG	2 cut(s)	231, 806
BssMI	GATC	5 cut(s)	9, 113, 483, 604, 663
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	109, 246
BstDEI	CTNAG	3 cut(s)	374, 454, 710
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	5 cut(s)	12, 116, 486, 607, 666
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	5 cut(s)	9, 113, 483, 604, 663
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	76, 151, 293
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	109, 246
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	82, 514, 699, 753
CviAII	CATG	3 cut(s)	356, 437, 641
CviQI	GTAC	4 cut(s)	82, 514, 699, 753
DdeI	CTNAG	3 cut(s)	374, 454, 710
DpnI	GATC	5 cut(s)	11, 115, 485, 606, 665
DpnII	GATC	5 cut(s)	9, 113, 483, 604, 663
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	2 cut(s)	293, 711
Eco53kI	GAGCTC	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	293, 711
FaeI	CATG	3 cut(s)	359, 440, 644
FaqI	GGGAC	2 cut(s)	169, 249
FatI	CATG	3 cut(s)	355, 436, 640
FauI	CCCGC	1 cut(s)	675
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	105, 270
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	2 cut(s)	293, 711
Fsp4HI	GCNGC	2 cut(s)	105, 270
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	105, 270
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	359, 440, 644
HinfI	GANTC	3 cut(s)	174, 208, 317
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	205, 368
Hpy188III	TCNNGA	2 cut(s)	89, 234
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	140, 460
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	5 cut(s)	36, 308, 632, 644, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
HpyF3I	CTNAG	3 cut(s)	374, 454, 710
HpySE526I	ACGT	1 cut(s)	755
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	359, 440, 644
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	9, 113, 483, 604, 663
LmnI	GCTCC	2 cut(s)	79, 706
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	546, 641
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	5 cut(s)	11, 115, 485, 606, 665
MboI	GATC	5 cut(s)	9, 113, 483, 604, 663
MboII	GAAGA	4 cut(s)	8, 11, 186, 425
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	76, 293, 711
MluCI	AATT	5 cut(s)	225, 327, 600, 645, 761
MlyI	GAGTC	2 cut(s)	168, 202
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	4 cut(s)	341, 719, 767, 825
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	5 cut(s)	9, 113, 483, 604, 663
NlaIII	CATG	3 cut(s)	359, 440, 644
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	106, 271
PleI	GAGTC	2 cut(s)	168, 202
PpsI	GAGTC	2 cut(s)	168, 202
Psp124BI	GAGCTC	1 cut(s)	711
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	4 cut(s)	83, 515, 700, 754
RsaNI	GTAC	4 cut(s)	82, 514, 699, 753
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	4 cut(s)	341, 719, 767, 825
SatI	GCNGC	2 cut(s)	105, 270
Sau3AI	GATC	5 cut(s)	9, 113, 483, 604, 663
SchI	GAGTC	2 cut(s)	168, 202
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	3 cut(s)	76, 293, 711
SfaNI	GCATC	2 cut(s)	546, 641
SfcI	CTRYAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	5 cut(s)	225, 327, 600, 645, 761
SsiI	CCGC	5 cut(s)	51, 77, 105, 300, 668
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	3 cut(s)	99, 278, 598
TasI	AATT	5 cut(s)	225, 327, 600, 645, 761
TatI	WGTACW	2 cut(s)	513, 698
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	4 cut(s)	341, 719, 767, 825
Tru9I	TTAA	4 cut(s)	341, 719, 767, 825
TscAI	CASTG	3 cut(s)	76, 158, 300
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	425, 746
TspRI	CASTG	3 cut(s)	76, 158, 300
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.