Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0031074

Physical Location & Seq

Genomic Coordinates Reverse (-)

53547021 .. 53548140

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGATGATCAATCTTCTTCTCTCTTTTCTCTGCATTTTCACCACCACCGCCCTTTCACAACCAACCAGTGCTCCGCCGTACTCTCAAGAACCCATCGACGCCGCCAGCCGATCTCTCCTCCTCCTCCTTCAATCTCCCCAACCCCACCACTGGCTTCAATCCCACCCAAGACTCCTCTCGTCCCTGCCCTCTTCGTCATCGGAGACTCCTACAGCACCAACAATTTCCTCGGGACATTGGCACGCACCGACAGCCTCCCCTACGGCTGCGATTTCGACACGCACGAGCCCACTGGGCGGTTCTGCAATGGCAGAATCCCAATCAATTATATTGATATTAAAGATTTTGGAACATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCATATTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAACTGGCCTTTCTTTTGATCCAAGGTATGCCAAAGGCTTCTTATAATTTTCTTCTCAGCTCTAACATGTCTCCGGGAAATGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

184

Amino Acids

19.5

Weight (kDa)

6.35

Isoelectric Point (pI)

66.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031074)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000499.1_g000011
rosa_samantha	Rh1CG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AciI	CCGC	4 cut(s)	51, 77, 105, 300
AclWI	GGATC	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	153, 299
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	3 cut(s)	134, 161, 398
AhlI	ACTAGT	1 cut(s)	400
AluBI	AGCT	3 cut(s)	394, 458, 525
AluI	AGCT	3 cut(s)	394, 458, 525
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	200, 540
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	547
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	64, 282
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	200, 540
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	2 cut(s)	105, 270
BlsI	GCNGC	2 cut(s)	106, 271
Bme1390I	CCNGG	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	231, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 299
Bse1I	ACTGG	4 cut(s)	69, 158, 300, 474
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	231, 487
BseLI	CCNNNNNNNGG	2 cut(s)	153, 299
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	468, 535
BseNI	ACTGG	4 cut(s)	69, 158, 300, 474
BseRI	GAGGAG	4 cut(s)	110, 113, 116, 167
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	169, 249
BslI	CCNNNNNNNGG	2 cut(s)	153, 299
BsmAI	GTCTC	2 cut(s)	200, 540
BsmFI	GGGAC	2 cut(s)	169, 249
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	76, 293
Bsp143I	GATC	3 cut(s)	9, 113, 483
BspACI	CCGC	4 cut(s)	51, 77, 105, 300
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	467, 534
BspPI	GGATC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	69, 158, 300, 474
BssECI	CCNNGG	2 cut(s)	231, 487
BssMI	GATC	3 cut(s)	9, 113, 483
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	109, 246
BstDEI	CTNAG	4 cut(s)	374, 454, 521, 552
BstKTI	GATC	3 cut(s)	12, 116, 486
BstMAI	GTCTC	2 cut(s)	200, 540
BstMBI	GATC	3 cut(s)	9, 113, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 297
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	76, 151, 293
Cac8I	GCNNGC	2 cut(s)	109, 246
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	356, 437, 532
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	4 cut(s)	374, 454, 521, 552
DpnI	GATC	3 cut(s)	11, 115, 485
DpnII	GATC	3 cut(s)	9, 113, 483
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	359, 440, 535
FaiI	YATR	8 cut(s)	332, 357, 427, 438, 462, 494, 510, 533
FaqI	GGGAC	2 cut(s)	169, 249
FatI	CATG	3 cut(s)	355, 436, 531
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	105, 270
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	105, 270
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	105, 270
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	359, 440, 535
HinfI	GANTC	3 cut(s)	174, 208, 317
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	205, 368
Hpy188III	TCNNGA	2 cut(s)	89, 234
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	140, 460
HpyCH4V	TGCA	2 cut(s)	36, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 297
HpyF3I	CTNAG	4 cut(s)	374, 454, 521, 552
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	359, 440, 535
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	9, 113, 483
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	82, 121, 139, 200, 281, 455
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	11, 115, 485
MboI	GATC	3 cut(s)	9, 113, 483
MboII	GAAGA	5 cut(s)	8, 11, 186, 425, 509
MhlI	GDGCHC	2 cut(s)	76, 293
MluCI	AATT	3 cut(s)	225, 327, 511
MlyI	GAGTC	2 cut(s)	168, 202
MnlI	CCTC	9 cut(s)	131, 134, 137, 188, 202, 241, 268, 362, 434
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	1 cut(s)	341
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	254, 297
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	3 cut(s)	9, 113, 483
NlaIII	CATG	3 cut(s)	359, 440, 535
NspI	RCATGY	1 cut(s)	535
PciI	ACATGT	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	106, 271
PleI	GAGTC	2 cut(s)	168, 202
PpsI	GAGTC	2 cut(s)	168, 202
PscI	ACATGT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	510
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	105, 270
Sau3AI	GATC	3 cut(s)	9, 113, 483
SchI	GAGTC	2 cut(s)	168, 202
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	76, 293
SetI	ASST	5 cut(s)	373, 396, 460, 493, 527
SfcI	CTRYAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	3 cut(s)	225, 327, 511
SsiI	CCGC	4 cut(s)	51, 77, 105, 300
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	487
TaqI	TCGA	2 cut(s)	99, 278
TasI	AATT	3 cut(s)	225, 327, 511
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	76, 158, 300
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	3 cut(s)	76, 158, 300
XceI	RCATGY	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.