Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000499.1

Orthogroup ID

OG0031074

Physical Location & Seq

Genomic Coordinates Forward (+)

67852 .. 70065

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggcgatgatcaatcttcttctctcttttctctgcattttcaccaccaccgccctttcacaaccaaccagtgctccgccgtactctcaagaacccatcgacgccgccagccgatctctcctcctcctccttcaatctccccaaccccaccactggcttcaatcccacccaagactcctctcgtccctgccctcttcgtcatcggagactcctacagcaccaacaatttcctcgggacattggcacgcaccgacagcctcccctacggctgcgatttcgacacgcacgagcccactgggcggttctgcaatggcagaatcccaatcaattatattgatattaaagattttggaacatggaagtatcagaggtcttagtatcttgtcttttgagcttgaactagttggttacacgattgctttggcatactgtcttcatggagggcttcccttctcagcttatggggaactggcctttcttttgatccaagctctaatattagttgccattatgtactattactcccaacctgtgagcatcaaaagatggatgacggcattactatattgtggtatagcaccaaccatattagcaggtcgaattgatcctgttctatttgaagctctatatgcatcacaacatgcaatttttctctttgccaagatcccgcagatatggcagaacttttctaacaaaagtacaggggagctcagcttcttaacgaactttatgaactttggaggttctatgggtacgttcaaattgttaaaagggctgtatgctgtaatgtgtaagatatgtattccggggaacttacagatatttaacttccttttgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

280

Amino Acids

30.51

Weight (kDa)

8.27

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	214 - 250	1e-09	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031074)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000499.1_g000011
rosa_samantha	Rh1CG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AciI	CCGC	5 cut(s)	51, 77, 105, 300, 668
AclWI	GGATC	3 cut(s)	478, 599, 658
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	83, 515, 700, 754
AfiI	CCNNNNNNNGG	2 cut(s)	153, 299
AgsI	TTSAA	5 cut(s)	134, 161, 398, 620, 760
AhlI	ACTAGT	1 cut(s)	400
AluBI	AGCT	6 cut(s)	394, 458, 491, 623, 709, 714
AluI	AGCT	6 cut(s)	394, 458, 491, 623, 709, 714
Alw21I	GWGCWC	2 cut(s)	76, 711
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	478, 599, 658
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	293, 711
BauI	CACGAG	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	76, 711
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	104, 540
BceAI	ACGGC	3 cut(s)	64, 282, 570
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	2 cut(s)	105, 270
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	2 cut(s)	106, 271
Bme1390I	CCNGG	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	807
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	546, 641
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	231, 806
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 299
Bse1I	ACTGG	4 cut(s)	69, 158, 300, 474
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	231, 806
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	153, 299
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	468, 724
BseNI	ACTGG	4 cut(s)	69, 158, 300, 474
BseRI	GAGGAG	4 cut(s)	110, 113, 116, 167
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	473
BsiHKAI	GWGCWC	2 cut(s)	76, 711
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	169, 249
BslI	CCNNNNNNNGG	2 cut(s)	153, 299
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	169, 249
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	76, 293, 711
Bsp143I	GATC	5 cut(s)	9, 113, 483, 604, 663
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	5 cut(s)	51, 77, 105, 300, 668
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	467, 723
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	3 cut(s)	478, 599, 658
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	69, 158, 300, 474
BssECI	CCNNGG	2 cut(s)	231, 806
BssMI	GATC	5 cut(s)	9, 113, 483, 604, 663
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	109, 246
BstDEI	CTNAG	3 cut(s)	374, 454, 710
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	5 cut(s)	12, 116, 486, 607, 666
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	5 cut(s)	9, 113, 483, 604, 663
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	76, 151, 293
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	109, 246
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	82, 514, 699, 753
CviAII	CATG	3 cut(s)	356, 437, 641
CviQI	GTAC	4 cut(s)	82, 514, 699, 753
DdeI	CTNAG	3 cut(s)	374, 454, 710
DpnI	GATC	5 cut(s)	11, 115, 485, 606, 665
DpnII	GATC	5 cut(s)	9, 113, 483, 604, 663
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	2 cut(s)	293, 711
Eco53kI	GAGCTC	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	293, 711
FaeI	CATG	3 cut(s)	359, 440, 644
FaqI	GGGAC	2 cut(s)	169, 249
FatI	CATG	3 cut(s)	355, 436, 640
FauI	CCCGC	1 cut(s)	675
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	105, 270
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	2 cut(s)	293, 711
Fsp4HI	GCNGC	2 cut(s)	105, 270
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	105, 270
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	359, 440, 644
HinfI	GANTC	3 cut(s)	174, 208, 317
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	205, 368
Hpy188III	TCNNGA	2 cut(s)	89, 234
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	140, 460
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	5 cut(s)	36, 308, 632, 644, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
HpyF3I	CTNAG	3 cut(s)	374, 454, 710
HpySE526I	ACGT	1 cut(s)	755
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	359, 440, 644
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	9, 113, 483, 604, 663
LmnI	GCTCC	2 cut(s)	79, 706
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	546, 641
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	5 cut(s)	11, 115, 485, 606, 665
MboI	GATC	5 cut(s)	9, 113, 483, 604, 663
MboII	GAAGA	4 cut(s)	8, 11, 186, 425
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	76, 293, 711
MluCI	AATT	5 cut(s)	225, 327, 600, 645, 761
MlyI	GAGTC	2 cut(s)	168, 202
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	4 cut(s)	341, 719, 767, 825
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	4 cut(s)	254, 297, 629, 676
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	5 cut(s)	9, 113, 483, 604, 663
NlaIII	CATG	3 cut(s)	359, 440, 644
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	106, 271
PleI	GAGTC	2 cut(s)	168, 202
PpsI	GAGTC	2 cut(s)	168, 202
Psp124BI	GAGCTC	1 cut(s)	711
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	4 cut(s)	83, 515, 700, 754
RsaNI	GTAC	4 cut(s)	82, 514, 699, 753
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	4 cut(s)	341, 719, 767, 825
SatI	GCNGC	2 cut(s)	105, 270
Sau3AI	GATC	5 cut(s)	9, 113, 483, 604, 663
SchI	GAGTC	2 cut(s)	168, 202
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	3 cut(s)	76, 293, 711
SfaNI	GCATC	2 cut(s)	546, 641
SfcI	CTRYAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	5 cut(s)	225, 327, 600, 645, 761
SsiI	CCGC	5 cut(s)	51, 77, 105, 300, 668
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	3 cut(s)	99, 278, 598
TasI	AATT	5 cut(s)	225, 327, 600, 645, 761
TatI	WGTACW	2 cut(s)	513, 698
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	4 cut(s)	341, 719, 767, 825
Tru9I	TTAA	4 cut(s)	341, 719, 767, 825
TscAI	CASTG	3 cut(s)	76, 158, 300
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	425, 746
TspRI	CASTG	3 cut(s)	76, 158, 300
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.