Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0021632

Physical Location & Seq

Genomic Coordinates Reverse (-)

242908 .. 243336

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgcgagcttcatgggaagatttggctgcaaattctgcagctgagaatgtaggttctgggtcttctgctaacagcgctaccggtggtgctcccactgctggtgctccgtcgcggtccacctacgtccccccgcatctgggtaaccgtccgccttcatcggacccacctgctccggcgtatagtgtgcctgctgggaatgatcgaggtgggtatggtggatctcgttggggtggtggcaggaatgacaacagtcggtctgggtatggagggagtggcggcggcggccgcggtggtggatggggtggcggcagaggtggcggttgggaccgtgggagggacagggaagtgaacccctttgaagatgatgacgaaggaaaaaaaaaacgaaggaagaaaaaaaaaagagaaattttaaatacacaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

142

Amino Acids

14.56

Weight (kDa)

10.05

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021632)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000052
rosa_samantha	Rh2AG543400 Rh2CG526600 Rh6BG320700
rosa_wichuraiana	Rw7G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	2 cut(s)	112, 288
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	31, 408
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	4 cut(s)	98, 136, 137, 334
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	2 cut(s)	8, 41
AluI	AGCT	2 cut(s)	8, 41
Alw21I	GWGCWC	2 cut(s)	91, 106
AlwI	GGATC	1 cut(s)	226
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	26, 38
ApoI	RAATTY	2 cut(s)	31, 408
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	114, 160, 325
AvaII	GGWCC	3 cut(s)	114, 160, 325
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	91, 106
BbvI	GCAGC	2 cut(s)	13, 50
BccI	CCATC	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	7 cut(s)	27, 39, 277, 280, 283, 286, 307
BlsI	GCNGC	7 cut(s)	28, 40, 278, 281, 284, 287, 308
Bme18I	GGWCC	3 cut(s)	114, 160, 325
BmgT120I	GGNCC	3 cut(s)	114, 160, 325
BmiI	GGNNCC	2 cut(s)	162, 326
BmsI	GCATC	1 cut(s)	142
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	286, 328
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 136, 137, 334
Bse118I	RCCGGY	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	286, 328
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	4 cut(s)	98, 136, 137, 334
BseMII	CTCAG	1 cut(s)	33
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	13, 50
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	112, 288
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	91, 106
BsiSI	CCGG	2 cut(s)	81, 173
BslFI	GGGAC	3 cut(s)	110, 338, 350
BslI	CCNNNNNNNGG	4 cut(s)	98, 136, 137, 334
BsmFI	GGGAC	3 cut(s)	110, 338, 350
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	91, 106
Bsp143I	GATC	2 cut(s)	199, 218
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	112, 288
BspLI	GGNNCC	2 cut(s)	162, 326
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	286, 328
BssMI	GATC	2 cut(s)	199, 218
Bst4CI	ACNGT	3 cut(s)	146, 251, 329
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	6, 189
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	2 cut(s)	286, 328
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	2 cut(s)	112, 288
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	202, 221
BstMBI	GATC	2 cut(s)	199, 218
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 74, 95, 282, 285, 315
BstPAI	GACNNNNGTC	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	2 cut(s)	112, 288
BstV1I	GCAGC	2 cut(s)	13, 50
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	286, 328
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	6, 189
CciNI	GCGGCCGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	114, 160, 325
Cfr42I	CCGCGG	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	4 cut(s)	8, 26, 41, 285
CviKI_1	RGCY	4 cut(s)	8, 26, 41, 285
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	201, 220
DpnII	GATC	2 cut(s)	199, 218
DraI	TTTAAA	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	114, 160, 325
Eco47III	AGCGCT	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 180, 213, 264
FaqI	GGGAC	3 cut(s)	110, 338, 350
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	7 cut(s)	27, 39, 277, 280, 283, 286, 307
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	7 cut(s)	27, 39, 277, 280, 283, 286, 307
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	7 cut(s)	27, 39, 277, 280, 283, 286, 307
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	81, 173
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	81, 173
Hpy166II	GTNNAC	2 cut(s)	117, 349
Hpy188I	TCNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	117, 349
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	162, 365, 381
HpyCH4III	ACNGT	3 cut(s)	146, 251, 329
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	29, 38
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 74, 95, 282, 285, 315
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	199, 218
LmnI	GCTCC	3 cut(s)	94, 109, 175
Lsp1109I	GCAGC	2 cut(s)	13, 50
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	201, 220
MboI	GATC	2 cut(s)	199, 218
MboII	GAAGA	4 cut(s)	29, 54, 371, 403
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	91, 106
MluCI	AATT	2 cut(s)	31, 408
MnlI	CCTC	4 cut(s)	197, 260, 305, 327
MseI	TTAA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	41, 288
MspI	CCGG	2 cut(s)	81, 173
MvnI	CGCG	2 cut(s)	112, 288
MwoI	GCNNNNNNNGC	6 cut(s)	35, 74, 95, 282, 285, 315
NdeII	GATC	2 cut(s)	199, 218
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	162, 326
NotI	GCGGCCGC	1 cut(s)	283
PaqCI	CACCTGC	1 cut(s)	175
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	7 cut(s)	28, 40, 278, 281, 284, 287, 308
PshAI	GACNNNNGTC	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	162, 326
PspPI	GGNCC	3 cut(s)	114, 160, 325
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	7 cut(s)	27, 39, 277, 280, 283, 286, 307
Sau3AI	GATC	2 cut(s)	199, 218
Sau96I	GGNCC	3 cut(s)	114, 160, 325
SduI	GDGCHC	2 cut(s)	91, 106
SetI	ASST	8 cut(s)	10, 43, 55, 122, 126, 169, 208, 316
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	36
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	3 cut(s)	114, 160, 325
Sse9I	AATT	2 cut(s)	31, 408
TaaI	ACNGT	3 cut(s)	146, 251, 329
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	31, 408
TauI	GCSGC	5 cut(s)	279, 282, 285, 288, 309
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	26, 38
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	114, 160, 325
XapI	RAATTY	2 cut(s)	31, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.