Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021632

Physical Location & Seq

Genomic Coordinates Reverse (-)

77209683 .. 77210377

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG543400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCGAGCTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAGAATGTAGGTTCTGGGTCTTCTGCTAACAGCGCTGCCGGTGGTGCTCCCACTGCTGGTGCTCCGTCGCGGTCCACCTACGTCCCCCCGCATCTGGGTAACCGTCCGCCTTCATCGGACCCACCTGCTCCGGCGTATAGTGCGCCTGCTGGGAATGATCGAGATGCACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

71

Amino Acids

6.9

Weight (kDa)

6.52

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021632)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000052
rosa_samantha	Rh2AG543400 Rh2CG526600 Rh6BG320700
rosa_wichuraiana	Rw7G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	1 cut(s)	112
AciI	CCGC	3 cut(s)	112, 131, 149
AcsI	RAATTY	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
AluBI	AGCT	2 cut(s)	8, 41
AluI	AGCT	2 cut(s)	8, 41
Alw21I	GWGCWC	2 cut(s)	91, 106
Aor51HI	AGCGCT	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	26, 38, 77
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	77, 187
AspS9I	GGNCC	2 cut(s)	114, 160
AvaII	GGWCC	2 cut(s)	114, 160
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	91, 106
BbvI	GCAGC	3 cut(s)	13, 50, 64
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	27, 39, 78
BlsI	GCNGC	3 cut(s)	28, 40, 79
Bme18I	GGWCC	2 cut(s)	114, 160
BmgT120I	GGNCC	2 cut(s)	114, 160
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	2 cut(s)	142, 196
BpiI	GAAGAC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 136, 137
Bse118I	RCCGGY	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	13, 50, 64
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	91, 106
BsiSI	CCGG	2 cut(s)	81, 173
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	91, 106
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	3 cut(s)	112, 131, 149
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	6, 189
BstDEI	CTNAG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 187
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 182
BstPI	GGTNACC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	13, 50, 64
BstV2I	GAAGAC	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	6, 189
CfoI	GCGC	2 cut(s)	77, 187
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	114, 160
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	8, 26, 41
CviKI_1	RGCY	3 cut(s)	8, 26, 41
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	114, 160
Eco47III	AGCGCT	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	1 cut(s)	15
FaiI	YATR	2 cut(s)	13, 180
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	27, 39, 78
Fsp4HI	GCNGC	3 cut(s)	27, 39, 78
GlaI	GCGC	2 cut(s)	76, 186
GluI	GCNGC	3 cut(s)	27, 39, 78
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	2 cut(s)	81, 173
HhaI	GCGC	2 cut(s)	77, 187
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	75, 185
HinP1I	GCGC	2 cut(s)	75, 185
HpaII	CCGG	2 cut(s)	81, 173
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	123, 211
HpyCH4V	TGCA	3 cut(s)	29, 38, 209
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 182
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	123, 211
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	2 cut(s)	75, 185
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	94, 109, 175
LpnPI	CCDG	8 cut(s)	42, 84, 94, 122, 177, 180, 186, 201
Lsp1109I	GCAGC	3 cut(s)	13, 50, 64
LweI	GCATC	2 cut(s)	142, 196
MaeII	ACGT	2 cut(s)	123, 211
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	91, 106
MluCI	AATT	1 cut(s)	31
MseI	TTAA	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	81, 173
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 182
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	162
PaqCI	CACCTGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	28, 40, 79
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	114, 160
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	214
SatI	GCNGC	3 cut(s)	27, 39, 78
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	114, 160
SduI	GDGCHC	2 cut(s)	91, 106
SetI	ASST	7 cut(s)	10, 43, 55, 122, 126, 169, 214
SfaNI	GCATC	2 cut(s)	142, 196
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	114, 160
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	112, 131, 149
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	2 cut(s)	126, 214
TaqI	TCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	3 cut(s)	26, 38, 77
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	114, 160
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.