Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021632

Physical Location & Seq

Genomic Coordinates Reverse (-)

55181898 .. 55182228

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCGAGCTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAGAATGTAGGTTCTGGGTTTTCTGCTAACAGCGCTGCCGGTGGTGCTCCCACTGCTGGTGCTCCGTCGCGGTCCACCTACGTCCCCCCGCATCTGGGTAACCGTCCGCCTTCATCGGACCCACCTGCTCCGGTGTATAGTGCGCCTGCTGGGAATGATCGAGGAATGACAACAGTCGGTCTGGGTATGGAGGGAGTGGCGGCGGCAGTGGTGGATGGGGTGGCGGCAGAGGTGGCGGTTGGGACAGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

98

Amino Acids

9.35

Weight (kDa)

5.0

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021632)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000052
rosa_samantha	Rh2AG543400 Rh2CG526600 Rh6BG320700
rosa_wichuraiana	Rw7G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	1 cut(s)	112
AciI	CCGC	7 cut(s)	112, 131, 149, 242, 245, 266, 278
AcsI	RAATTY	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
AluBI	AGCT	2 cut(s)	8, 41
AluI	AGCT	2 cut(s)	8, 41
Alw21I	GWGCWC	2 cut(s)	91, 106
Aor51HI	AGCGCT	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	26, 38, 77
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	77, 187
AspS9I	GGNCC	2 cut(s)	114, 160
AvaII	GGWCC	2 cut(s)	114, 160
Bbv12I	GWGCWC	2 cut(s)	91, 106
BbvI	GCAGC	3 cut(s)	13, 50, 64
BccI	CCATC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	6 cut(s)	27, 39, 78, 243, 246, 267
BlsI	GCNGC	6 cut(s)	28, 40, 79, 244, 247, 268
Bme18I	GGWCC	2 cut(s)	114, 160
BmgT120I	GGNCC	2 cut(s)	114, 160
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	142
BoxI	GACNNNNGTC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 136, 137
Bse118I	RCCGGY	1 cut(s)	80
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	13, 50, 64
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	91, 106
BsiSI	CCGG	2 cut(s)	81, 173
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	98, 136, 137
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	91, 106
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	7 cut(s)	112, 131, 149, 242, 245, 266, 278
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	146, 217
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	6, 189
BstDEI	CTNAG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 187
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 275
BstPAI	GACNNNNGTC	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	13, 50, 64
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	2 cut(s)	93, 255
BtsIMutI	CAGTG	2 cut(s)	93, 255
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	6, 189
CfoI	GCGC	2 cut(s)	77, 187
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	114, 160
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	8, 26, 41
CviKI_1	RGCY	3 cut(s)	8, 26, 41
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	114, 160
Eco47III	AGCGCT	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	1 cut(s)	15
FaiI	YATR	3 cut(s)	13, 180, 230
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	6 cut(s)	27, 39, 78, 243, 246, 267
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	27, 39, 78, 243, 246, 267
GlaI	GCGC	2 cut(s)	76, 186
GluI	GCNGC	6 cut(s)	27, 39, 78, 243, 246, 267
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	2 cut(s)	81, 173
HhaI	GCGC	2 cut(s)	77, 187
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	75, 185
HinP1I	GCGC	2 cut(s)	75, 185
HpaII	CCGG	2 cut(s)	81, 173
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	2 cut(s)	146, 217
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	29, 38
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 275
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	2 cut(s)	75, 185
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	94, 109, 175
Lsp1109I	GCAGC	3 cut(s)	13, 50, 64
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	91, 106
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	197, 226, 265
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	81, 173
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 74, 86, 95, 275
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	162
PaqCI	CACCTGC	1 cut(s)	175
PkrI	GCNGC	6 cut(s)	28, 40, 79, 244, 247, 268
PshAI	GACNNNNGTC	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	114, 160
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	41
SatI	GCNGC	6 cut(s)	27, 39, 78, 243, 246, 267
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	114, 160
SduI	GDGCHC	2 cut(s)	91, 106
SetI	ASST	7 cut(s)	10, 43, 55, 122, 126, 169, 276
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	114, 160
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	7 cut(s)	112, 131, 149, 242, 245, 266, 278
TaaI	ACNGT	2 cut(s)	146, 217
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	31
TauI	GCSGC	3 cut(s)	245, 248, 269
TscAI	CASTG	2 cut(s)	100, 255
TseI	GCWGC	3 cut(s)	26, 38, 77
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	100, 255
VpaK11BI	GGWCC	2 cut(s)	114, 160
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.