Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0031078

Physical Location & Seq

Genomic Coordinates Reverse (-)

286175 .. 286717

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgactgacatgaggatgaggcatgacaaaaaatcaggctatcctgggcgcacttacagattctacacaggcgaaagagtgtttgatttcggttatggcctcagctactccaactacgcttatcactttgtatcttcattaacccaaaagaacctctacctaaatgagtcatcggttggtctaccagctaagaattcggactctagacgctaccagttagtttcagatctaggtgaagaattctgtcagaagaatttgttcaaggtcactgtcagggctaagaatgacggagagatggctggtaagcatccagtgttgctatttgtaagtcagaaaaatccgtcaaatggaagtccaataaaacagttggttggattcaaaagcgtgatactaagcgccggggaaaaagctgaatttgaattcatgctgaacccttgtgagcatttcagccatgcaaatgaggatggatcgatggtggtagaagaaggttctcgtttcttggttgtgggtgatgtagagcaccctattcatgtcatagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

180

Amino Acids

20.36

Weight (kDa)

7.06

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031078)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8187416.1_g000001 Rmu_sc0000540.1_g000067

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	5 cut(s)	193, 239, 253, 413, 419
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	262, 379, 419
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	105, 188, 410
AluI	AGCT	3 cut(s)	105, 188, 410
Alw21I	GWGCWC	1 cut(s)	522
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	5 cut(s)	193, 239, 253, 413, 419
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	51, 398
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	245, 521
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	289, 458, 466
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	400
BfaI	CTAG	2 cut(s)	204, 230
BfoI	RGCGCY	1 cut(s)	399
BglII	AGATCT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	45, 400
BmrFI	CCNGG	2 cut(s)	45, 400
BmsI	GCATC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	44, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	214, 311
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	44, 399
BseGI	GGATG	3 cut(s)	21, 307, 469
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	214, 311
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	347
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	226, 467
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	470
BspPI	GGATC	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	214, 311
BssECI	CCNNGG	2 cut(s)	44, 399
BssMI	GATC	2 cut(s)	226, 467
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	271, 366
BstDEI	CTNAG	4 cut(s)	101, 189, 279, 392
BstF5I	GGATG	3 cut(s)	21, 307, 469
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	2 cut(s)	51, 398
BstKTI	GATC	2 cut(s)	229, 470
BstMBI	GATC	2 cut(s)	226, 467
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 398
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	21, 307, 469
BtsIMutI	CAGTG	2 cut(s)	267, 318
CfoI	GCGC	2 cut(s)	51, 398
ClaI	ATCGAT	1 cut(s)	470
CseI	GACGC	1 cut(s)	216
CviAII	CATG	5 cut(s)	10, 23, 424, 452, 530
CviJI	RGCY	8 cut(s)	39, 99, 105, 188, 278, 299, 410, 450
CviKI_1	RGCY	8 cut(s)	39, 99, 105, 188, 278, 299, 410, 450
DdeI	CTNAG	4 cut(s)	101, 189, 279, 392
DpnI	GATC	2 cut(s)	228, 469
DpnII	GATC	2 cut(s)	226, 467
EcoRI	GAATTC	3 cut(s)	193, 239, 419
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	5 cut(s)	13, 26, 427, 455, 533
FaiI	YATR	7 cut(s)	11, 24, 96, 425, 453, 531, 536
FatI	CATG	5 cut(s)	9, 22, 423, 451, 529
FblI	GTMKAC	1 cut(s)	181
FokI	GGATG	3 cut(s)	28, 294, 476
FspBI	CTAG	2 cut(s)	204, 230
GlaI	GCGC	2 cut(s)	50, 397
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	51, 398
Hin1II	CATG	5 cut(s)	13, 26, 427, 455, 533
Hin6I	GCGC	2 cut(s)	49, 396
HinP1I	GCGC	2 cut(s)	49, 396
HinfI	GANTC	4 cut(s)	60, 167, 200, 375
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	2 cut(s)	245, 521
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	199, 226, 249, 333
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	2 cut(s)	271, 366
HpyCH4V	TGCA	1 cut(s)	455
HpyF3I	CTNAG	4 cut(s)	101, 189, 279, 392
Hsp92II	CATG	5 cut(s)	13, 26, 427, 455, 533
HspAI	GCGC	2 cut(s)	49, 396
Kzo9I	GATC	2 cut(s)	226, 467
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	204, 230
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	228, 469
MboI	GATC	2 cut(s)	226, 467
MboII	GAAGA	4 cut(s)	126, 248, 262, 494
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	5 cut(s)	193, 239, 253, 413, 419
MlyI	GAGTC	2 cut(s)	176, 194
MmeI	TCCRAC	2 cut(s)	135, 352
MnlI	CCTC	5 cut(s)	6, 12, 110, 164, 454
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	14, 456
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	45, 400
MvaI	CCWGG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	2 cut(s)	226, 467
NlaIII	CATG	5 cut(s)	13, 26, 427, 455, 533
NmuCI	GTSAC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	60, 375
PleI	GAGTC	2 cut(s)	175, 194
PpsI	GAGTC	2 cut(s)	175, 194
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	14, 456
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	226, 467
SchI	GAGTC	2 cut(s)	176, 194
ScrFI	CCNGG	2 cut(s)	45, 400
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	8 cut(s)	107, 156, 162, 190, 235, 267, 412, 490
SfaNI	GCATC	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	14, 456
Sse9I	AATT	5 cut(s)	193, 239, 253, 413, 419
SspMI	CTAG	2 cut(s)	204, 230
StyD4I	CCNGG	2 cut(s)	43, 398
TaaI	ACNGT	2 cut(s)	271, 366
TaqI	TCGA	1 cut(s)	470
TasI	AATT	5 cut(s)	193, 239, 253, 413, 419
TfiI	GAWTC	2 cut(s)	60, 375
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	274, 318
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	126, 412, 518
TspGWI	ACGGA	2 cut(s)	303, 330
TspRI	CASTG	2 cut(s)	274, 318
XapI	RAATTY	5 cut(s)	193, 239, 253, 413, 419
XbaI	TCTAGA	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	204, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.