Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000546.1

Orthogroup ID

OG0031080

Physical Location & Seq

Genomic Coordinates Forward (+)

270724 .. 271337

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000546.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ctgcaatcaagattggaacaagaggaagaagccaaagctgctttgttaggaagaatccaaaggttgacaaagttgattttggtctccacaaaagcaacacagccatcaaggtttcctcaccgacctggtcttagaagaagacattcctttggggaagaggagcttgcatatctaccatacaaaaggcgggacttgattttagaggatgaaaacattgacttgtttgtttctcctcttgaggggaatactgaaactgctgatgcgctgaaggaggataagaagactcggaagcatggactgttaaactggttaaagctacgggtacgtcccatttggttgctagaaatctatggtcctttcttaaggttgattattagaaatctatatcatgttgctcaacgaatctccactagaacagccaatatggaatttggaccggttttatctctttcttgtgtcaacaatttttgtgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

158

Amino Acids

18.42

Weight (kDa)

9.69

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031080)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000546.1_g000057 Rmu_sc0025846.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	38, 163, 316
AluI	AGCT	3 cut(s)	38, 163, 316
Alw26I	GTCTC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	428
AsiGI	ACCGGT	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	353, 434
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	353, 434
BbsI	GAAGAC	2 cut(s)	145, 287
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	341, 411
BfrI	CTTAAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	353, 434
BmgT120I	GGNCC	2 cut(s)	353, 434
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	145, 287
BpuEI	CTTGAG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	173, 222
BseXI	GCAGC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	2 cut(s)	203, 312
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	203, 312
Bso31I	GGTCTC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	145, 287
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	353, 434
CsiI	ACCWGGT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	436
CviAII	CATG	2 cut(s)	293, 389
CviJI	RGCY	6 cut(s)	32, 38, 103, 163, 316, 419
CviKI_1	RGCY	6 cut(s)	32, 38, 103, 163, 316, 419
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	353, 434
Eco57I	CTGAAG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	296, 392
FaiI	YATR	7 cut(s)	169, 178, 294, 351, 385, 390, 425
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	203, 312
FatI	CATG	2 cut(s)	292, 388
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	341, 411
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	39
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	296, 392
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	2 cut(s)	66, 460
HindII	GTYRAC	2 cut(s)	66, 460
HinfI	GANTC	3 cut(s)	54, 283, 402
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	66, 460
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	9, 236
Hpy8I	GTNNAC	2 cut(s)	66, 460
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	4, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	296, 392
HspAI	GCGC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	111, 138, 292, 450
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	250
MabI	ACCWGGT	1 cut(s)	124
MaeI	CTAG	2 cut(s)	341, 411
MaeII	ACGT	1 cut(s)	325
MboII	GAAGA	6 cut(s)	38, 63, 147, 150, 167, 292
MluCI	AATT	2 cut(s)	428, 463
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	16, 126, 151, 196, 232, 243, 265
MroXI	GAANNNNTTC	1 cut(s)	142
MseI	TTAA	3 cut(s)	302, 311, 362
MspCI	CTTAAG	1 cut(s)	361
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	296, 392
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	54, 402
PflFI	GACNNNGTC	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	353, 434
PsyI	GACNNNGTC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	302, 311, 362
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	353, 434
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	8 cut(s)	40, 65, 113, 127, 165, 318, 328, 368
SexAI	ACCWGGT	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	2 cut(s)	353, 434
SmlI	CTYRAG	2 cut(s)	236, 361
SmoI	CTYRAG	2 cut(s)	236, 361
Sse9I	AATT	2 cut(s)	428, 463
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	341, 411
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	300
TaiI	ACGT	1 cut(s)	328
TasI	AATT	2 cut(s)	428, 463
TfiI	GAWTC	2 cut(s)	54, 402
Tru1I	TTAA	3 cut(s)	302, 311, 362
Tru9I	TTAA	3 cut(s)	302, 311, 362
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	353, 434
XapI	RAATTY	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	2 cut(s)	341, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.