Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000575.1

Orthogroup ID

OG0031084

Physical Location & Seq

Genomic Coordinates Forward (+)

89424 .. 91415

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000575.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgaggtctgttgtactcgtggtcgaatttggtcaaacgccagcgagtccaaagtgtagcgcagccgcaaccgagaagcttcagcgagctgaggtcatgcatccggatgatgaccttcgaaggccagaagcctggaacctcctgtctccattctcttactttgttggcgacccctactccaaccacaactgctgggagaggtcggaagacatggacacgagtcgcacggtgtacaaaatcgaccagaacaacccgggatccgacgtggcaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008810 GO:0009507 GO:0009536 GO:0009825 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0040007 GO:0042545 GO:0042547 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

91

Amino Acids

10.23

Weight (kDa)

4.8

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031084)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000575.1_g000014
rosa_samantha	Rh2DG097500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	252, 265
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	15, 233
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	2 cut(s)	79, 89
AluI	AGCT	2 cut(s)	79, 89
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	252, 265
Ama87I	CYCGRG	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	2 cut(s)	254, 255
AsuII	TTCGAA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	257
BauI	CACGAG	2 cut(s)	17, 217
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	254, 255
BcoDI	GTCTC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
Bme1390I	CCNGG	3 cut(s)	133, 254, 255
BmeT110I	CYCGRG	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	137, 259
BmrFI	CCNGG	3 cut(s)	133, 254, 255
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	118
BpuMI	CCSGG	2 cut(s)	254, 255
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	100, 112
BseMII	CTCAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	104, 254
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	253
Bsp119I	TTCGAA	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	137, 259
BspPI	GGATC	2 cut(s)	252, 265
BspT104I	TTCGAA	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	257
BssSI	CACGAG	2 cut(s)	17, 217
Bst2BI	CACGAG	2 cut(s)	17, 217
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	3 cut(s)	42, 87, 271
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	100, 112
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	133
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	131, 252, 253
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	100, 112
Cac8I	GCNNGC	3 cut(s)	42, 87, 271
CfoI	GCGC	1 cut(s)	62
Cfr9I	CCCGGG	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	14, 232
CviAII	CATG	2 cut(s)	97, 211
CviJI	RGCY	6 cut(s)	65, 79, 89, 124, 131, 273
CviKI_1	RGCY	6 cut(s)	65, 79, 89, 124, 131, 273
CviQI	GTAC	2 cut(s)	14, 232
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	102
FaeI	CATG	2 cut(s)	100, 214
FaiI	YATR	2 cut(s)	98, 212
FatI	CATG	2 cut(s)	96, 210
Fnu4HI	GCNGC	2 cut(s)	63, 66
FokI	GGATG	2 cut(s)	87, 119
Fsp4HI	GCNGC	2 cut(s)	63, 66
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	63, 66
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	104, 254
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	100, 214
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	46, 220
HpaII	CCGG	2 cut(s)	104, 254
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	205, 262
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	114, 125
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	100, 214
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	55, 229
MmeI	TCCRAC	2 cut(s)	183, 204
MnlI	CCTC	3 cut(s)	85, 149, 192
Mph1103I	ATGCAT	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	103
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	2 cut(s)	104, 254
MspR9I	CCNGG	3 cut(s)	133, 254, 255
MvaI	CCWGG	1 cut(s)	133
NciI	CCSGG	2 cut(s)	254, 255
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	100, 214
NlaIV	GGNNCC	2 cut(s)	137, 259
NsiI	ATGCAT	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	64, 67
PleI	GAGTC	2 cut(s)	54, 228
PpsI	GAGTC	2 cut(s)	54, 228
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	137, 259
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	15, 233
RsaNI	GTAC	2 cut(s)	14, 232
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	2 cut(s)	63, 66
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	55, 229
ScrFI	CCNGG	3 cut(s)	133, 254, 255
SetI	ASST	8 cut(s)	8, 81, 91, 96, 117, 141, 203, 267
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	118
SmaI	CCCGGG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	131, 252, 253
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	3 cut(s)	24, 118, 240
TasI	AATT	1 cut(s)	26
TatI	WGTACW	2 cut(s)	13, 231
TauI	GCSGC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	62
TspMI	CCCGGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	26
XmaI	CCCGGG	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.