Rh2DG097500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0031084
Physical Location & Seq
Forward (+)
7792289 .. 7794431
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG097500.1

Sequence Viewer

Length: 207 bp
ATGACAAGAACGAGGTCTGTTGTACTCGTGGTTGAACACGGTCAAACGCCAGGGAATCCAAAGGGTAGCGCAGCTACAGTCGAGAAGCTTCAGCAAGCTAAGGTTGTGGATCCGGACGATGACCTTCGACGACCAGAAGCCTGGAACCTTCGGTCTCCACTCTATAACTTGATTCGGTTCTATAAACAAGCTTCAGATCGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.78

Weight (kDa)

9.59

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0031084)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000575.1_g000014
rosa_samantha Rh2DG097500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 112
AclWI GGATC 2 cut(s) 104, 117
AcuI CTGAAG 2 cut(s) 74, 177
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 2 cut(s) 49, 140
AluBI AGCT 4 cut(s) 74, 88, 98, 191
AluI AGCT 4 cut(s) 74, 88, 98, 191
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 104, 117
Aor13HI TCCGGA 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 26
BbvI GCAGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 51, 142
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 51, 142
BmiI GGNNCC 2 cut(s) 111, 146
BmrFI CCNGG 2 cut(s) 51, 142
Bpu10I CCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 51, 142
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 199
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 159
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 109, 196
BspDI ATCGAT 1 cut(s) 199
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 111, 146
BspPI GGATC 2 cut(s) 104, 117
BspTNI GGTCTC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 109, 196
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 51, 142
Bst4CI ACNGT 2 cut(s) 41, 79
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 112, 199
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 109, 196
BstNI CCWGG 2 cut(s) 51, 142
BstSCI CCNGG 2 cut(s) 49, 140
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 199
BsuTUI ATCGAT 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 5 cut(s) 74, 88, 98, 140, 191
CviKI_1 RGCY 5 cut(s) 74, 88, 98, 140, 191
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 111, 198
DpnII GATC 2 cut(s) 109, 196
Eco31I GGTCTC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 74, 177
EcoRII CCWGG 2 cut(s) 49, 140
FaiI YATR 2 cut(s) 165, 183
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 72
HapII CCGG 1 cut(s) 113
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 2 cut(s) 86, 189
HinfI GANTC 2 cut(s) 55, 172
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 82, 113
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 134, 158
HpyCH4III ACNGT 2 cut(s) 41, 79
HpyF3I CTNAG 1 cut(s) 99
HspAI GCGC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 109, 196
LpnPI CCDG 6 cut(s) 36, 63, 126, 127, 147, 154
Lsp1109I GCAGC 1 cut(s) 83
MalI GATC 2 cut(s) 111, 198
MboI GATC 2 cut(s) 109, 196
MflI RGATCY 1 cut(s) 109
MnlI CCTC 1 cut(s) 6
MroI TCCGGA 1 cut(s) 112
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 51, 142
MvaI CCWGG 2 cut(s) 51, 142
NdeII GATC 2 cut(s) 109, 196
NlaIV GGNNCC 2 cut(s) 111, 146
PfeI GAWTC 2 cut(s) 55, 172
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 49, 140
PspGI CCWGG 2 cut(s) 49, 140
PspN4I GGNNCC 2 cut(s) 111, 146
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 109, 196
ScrFI CCNGG 2 cut(s) 51, 142
SetI ASST 8 cut(s) 17, 76, 90, 100, 105, 126, 150, 193
SfcI CTRYAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 49, 140
TaaI ACNGT 2 cut(s) 41, 79
TaqI TCGA 3 cut(s) 81, 127, 199
TaqII GACCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 2 cut(s) 55, 172
TseI GCWGC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.